Detailed information    

insolico Bioinformatically predicted

Overview

Name   covR   Type   Regulator
Locus tag   ABC804_RS09085 Genome accession   NZ_CP155536
Coordinates   1726472..1727161 (-) Length   229 a.a.
NCBI ID   WP_363860486.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain M264-3     
Function   repress comR expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1721472..1732161
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC804_RS09065 (ABC804_09065) - 1721943..1722818 (+) 876 WP_010963214.1 lanthionine synthetase LanC family protein -
  ABC804_RS09070 (ABC804_09070) - 1722861..1724093 (+) 1233 WP_000765691.1 MFS transporter -
  ABC804_RS09075 (ABC804_09075) - 1724211..1725332 (-) 1122 WP_000771140.1 N-acetylmuramoyl-L-alanine amidase family protein -
  ABC804_RS09080 (ABC804_09080) cbpC 1725351..1726373 (-) 1023 WP_000771086.1 choline-binding protein CbpC -
  ABC804_RS09085 (ABC804_09085) covR 1726472..1727161 (-) 690 WP_363860486.1 response regulator transcription factor Regulator
  ABC804_RS09090 (ABC804_09090) gndA 1727173..1728597 (-) 1425 WP_000158781.1 NADP-dependent phosphogluconate dehydrogenase -
  ABC804_RS09095 (ABC804_09095) mapZ 1728673..1730067 (-) 1395 WP_000039274.1 mid-cell-anchored protein MapZ -
  ABC804_RS09100 (ABC804_09100) - 1730080..1731237 (-) 1158 WP_000711393.1 class I SAM-dependent RNA methyltransferase -
  ABC804_RS09110 (ABC804_09110) gpsB 1731723..1732052 (-) 330 WP_000146522.1 cell division regulator GpsB -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26928.23 Da        Isoelectric Point: 6.9836

>NTDB_id=997452 ABC804_RS09085 WP_363860486.1 1726472..1727161(-) (covR) [Streptococcus pneumoniae strain M264-3]
MGKRILLLEKERNLAHFLSLELQKEQYRVDLVEEGQKALSMALQTDYDLILLNVNLGDMMAQDFAEKLSRTKPASFIMIL
DHWEDLQEELEVVQRFAVSYIYKPVLIENLVARISAIFRGRDFIDQHCSLMKVPRTYRNLRIDVEHHTVYRGEEMIALTR
REYDLLATLMGSKKVLTREQLLESVWKYESATETNIVDVYIRYLRSKLDVKGQKSYIKTVRGVGYTMQE

Nucleotide


Download         Length: 690 bp        

>NTDB_id=997452 ABC804_RS09085 WP_363860486.1 1726472..1727161(-) (covR) [Streptococcus pneumoniae strain M264-3]
ATGGGGAAACGGATTTTATTACTTGAGAAAGAACGAAATCTAGCTCATTTTTTAAGTTTGGAACTCCAGAAAGAGCAGTA
TCGGGTTGATCTGGTAGAGGAGGGGCAAAAAGCCCTCTCCATGGCTCTTCAGACAGACTATGATTTGATTTTATTGAATG
TTAATCTGGGAGATATGATGGCTCAGGATTTTGCAGAAAAATTGAGCCGAACTAAACCTGCCTCATTCATCATGATTTTA
GATCATTGGGAAGACTTGCAAGAAGAGCTGGAAGTTGTTCAGCGTTTTGCAGTTTCATACATCTATAAGCCAGTCCTTAT
CGAAAATCTGGTAGCGCGTATTTCGGCGATCTTCCGAGGTCGGGACTTCATTGATCAACACTGCAGTCTGATGAAAGTTC
CAAGGACCTACCGCAATCTTAGGATAGATGTTGAACATCACACGGTTTATCGTGGTGAAGAGATGATTGCTCTGACACGC
CGTGAGTATGACCTTTTGGCGACACTTATGGGAAGCAAGAAAGTATTGACTCGTGAGCAATTGTTGGAAAGTGTTTGGAA
GTATGAAAGTGCGACCGAGACAAATATCGTAGATGTCTATATCCGCTATCTACGGAGCAAGCTTGATGTTAAAGGCCAAA
AAAGCTACATTAAAACTGTGCGTGGTGTTGGATATACCATGCAAGAATAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(154-226)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  covR Streptococcus salivarius strain HSISS4

48.261

100

0.485
  covR Lactococcus lactis subsp. lactis strain DGCC12653

46.522

100

0.467

Multiple sequence alignment