Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ABC814_RS02540 Genome accession   NZ_CP155533
Coordinates   493701..494432 (+) Length   243 a.a.
NCBI ID   WP_000889919.1    Uniprot ID   A0A062WNF5
Organism   Streptococcus pneumoniae strain Spn1439-106     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 488701..499432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC814_RS02515 (ABC814_02515) - 490379..490783 (+) 405 WP_000343113.1 hypothetical protein -
  ABC814_RS02520 (ABC814_02520) dnaJ 491127..492263 (+) 1137 WP_001066295.1 molecular chaperone DnaJ -
  ABC814_RS02525 (ABC814_02525) - 492570..492764 (-) 195 WP_050267646.1 hypothetical protein -
  ABC814_RS02530 (ABC814_02530) - 492926..493213 (-) 288 WP_000777760.1 hypothetical protein -
  ABC814_RS02535 (ABC814_02535) - 493223..493633 (-) 411 WP_001278301.1 HIT family protein -
  ABC814_RS02540 (ABC814_02540) pptA 493701..494432 (+) 732 WP_000889919.1 ABC transporter ATP-binding protein Regulator
  ABC814_RS02545 (ABC814_02545) - 494429..495478 (+) 1050 WP_000653767.1 ABC transporter permease -
  ABC814_RS02550 (ABC814_02550) - 495646..495975 (-) 330 WP_000132572.1 hypothetical protein -
  ABC814_RS02555 (ABC814_02555) - 496251..496589 (+) 339 WP_000876676.1 LytTR family DNA-binding domain-containing protein -
  ABC814_RS02560 (ABC814_02560) comE/blpR 496594..497331 (+) 738 WP_001219147.1 response regulator transcription factor Regulator
  ABC814_RS02565 (ABC814_02565) - 497345..498685 (+) 1341 WP_001017622.1 sensor histidine kinase -
  ABC814_RS02570 (ABC814_02570) blpC 498727..498882 (-) 156 WP_000358817.1 quorum-sensing system pheromone BlpC -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27012.49 Da        Isoelectric Point: 4.7737

>NTDB_id=997152 ABC814_RS02540 WP_000889919.1 493701..494432(+) (pptA) [Streptococcus pneumoniae strain Spn1439-106]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLDQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=997152 ABC814_RS02540 WP_000889919.1 493701..494432(+) (pptA) [Streptococcus pneumoniae strain Spn1439-106]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTTCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAGATGTTCCGTCTGGACCAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WNF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.614

99.177

0.72
  pptA Streptococcus thermophilus LMD-9

71.784

99.177

0.712

Multiple sequence alignment