Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ABC810_RS08750 Genome accession   NZ_CP155532
Coordinates   1726429..1727160 (-) Length   243 a.a.
NCBI ID   WP_000889923.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain SP264     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1721429..1732160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC810_RS08720 (ABC810_08710) blpC 1721977..1722105 (+) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -
  ABC810_RS08725 (ABC810_08715) - 1722176..1723516 (-) 1341 WP_001017642.1 sensor histidine kinase -
  ABC810_RS08730 (ABC810_08720) comE/blpR 1723530..1724267 (-) 738 WP_001219120.1 LytTR family DNA-binding domain-containing protein Regulator
  ABC810_RS08735 (ABC810_08725) - 1724272..1724610 (-) 339 WP_000876675.1 LytTR family DNA-binding domain-containing protein -
  ABC810_RS08740 (ABC810_08730) - 1724886..1725215 (+) 330 WP_000132572.1 hypothetical protein -
  ABC810_RS08745 (ABC810_08735) - 1725383..1726432 (-) 1050 WP_000653774.1 ABC transporter permease -
  ABC810_RS08750 (ABC810_08740) pptA 1726429..1727160 (-) 732 WP_000889923.1 ABC transporter ATP-binding protein Regulator
  ABC810_RS08755 (ABC810_08745) - 1727228..1727638 (+) 411 WP_001278301.1 HIT family protein -
  ABC810_RS08760 (ABC810_08750) - 1727648..1727935 (+) 288 WP_000777753.1 hypothetical protein -
  ABC810_RS08765 (ABC810_08755) - 1728097..1728381 (+) 285 WP_025169639.1 hypothetical protein -
  ABC810_RS08770 (ABC810_08760) dnaJ 1728693..1729829 (-) 1137 WP_001066295.1 molecular chaperone DnaJ -
  ABC810_RS08775 (ABC810_08765) - 1730231..1730587 (-) 357 WP_000114427.1 hypothetical protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27026.52 Da        Isoelectric Point: 4.7792

>NTDB_id=997131 ABC810_RS08750 WP_000889923.1 1726429..1727160(-) (pptA) [Streptococcus pneumoniae strain SP264]
MLEIKNLTGGYVHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSININGLTLQGDATSYRKQIGYIP
ETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKMFRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPLAISDLIQLLEVEKQKGKSILMSTHVLDSAEKMCDAFVILHKGEVRAKGNLLQLREAFDMPEASLNDIYLALTKE
EDL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=997131 ABC810_RS08750 WP_000889923.1 1726429..1727160(-) (pptA) [Streptococcus pneumoniae strain SP264]
ATGTTAGAAATTAAAAACCTGACAGGTGGCTATGTTCATGTCCCTGTTTTGAAAGATGTGTCCTTTACTGTTGAAAGTGG
GCAGTTGGTCGGTTTGATTGGTCTCAATGGTGCTGGGAAATCAACGACGATCAATGAGATTATCGGTCTGTTGGCACCTT
ATAGTGGCTCCATCAATATCAATGGCCTGACTCTGCAAGGAGATGCGACTAGCTACCGCAAGCAGATTGGCTACATTCCT
GAGACGCCTAGTCTGTATGAGGAATTGACCCTCAGAGAGCATATCGAAACGGTTGCTATGGCTTACGGTATTGAGCAAAA
AGTGGCTTTCGAACGAGTAGAGCCCTTGTTAAAAATGTTCCGTTTGGAACAGAAATTAGACTGGTTCCCTGTTCATTTTT
CAAAAGGGATGAAGCAGAAGGTCATGATTATCTGTGCTTTTGTGGTGGATCCAAGTCTTTTCATCGTGGATGAGCCTTTC
CTTGGTCTTGATCCGCTGGCTATTTCTGATTTGATTCAGCTTTTGGAAGTGGAGAAGCAAAAGGGCAAGTCTATTCTCAT
GAGTACCCACGTGCTGGATTCGGCGGAGAAGATGTGTGATGCCTTTGTCATTCTTCACAAGGGAGAGGTGCGTGCCAAAG
GCAATCTCCTGCAACTACGTGAAGCCTTTGATATGCCTGAGGCTAGTTTGAATGATATTTACTTGGCTCTGACCAAAGAG
GAGGATCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

72.199

99.177

0.716
  pptA Streptococcus thermophilus LMD-9

71.369

99.177

0.708

Multiple sequence alignment