Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   GZL_RS04325 Genome accession   NZ_CP003987
Coordinates   1134474..1135130 (-) Length   218 a.a.
NCBI ID   WP_039629575.1    Uniprot ID   -
Organism   Streptomyces sp. 769     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1129474..1140130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GZL_RS04305 (GZL_01012) - 1130463..1130819 (+) 357 WP_052286488.1 hypothetical protein -
  GZL_RS04310 (GZL_01014) - 1131624..1132214 (-) 591 WP_039629571.1 XRE family transcriptional regulator -
  GZL_RS04315 (GZL_01015) - 1132249..1133148 (+) 900 WP_039640111.1 ornithine cyclodeaminase family protein -
  GZL_RS04320 (GZL_01016) - 1133203..1134321 (+) 1119 WP_039629573.1 aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme -
  GZL_RS04325 (GZL_01017) vraR 1134474..1135130 (-) 657 WP_039629575.1 response regulator transcription factor Regulator
  GZL_RS04330 (GZL_01018) - 1135127..1136317 (-) 1191 WP_159030764.1 histidine kinase -
  GZL_RS04335 (GZL_01019) - 1136584..1137561 (-) 978 WP_159030765.1 hypothetical protein -
  GZL_RS04340 (GZL_01021) - 1137845..1138303 (+) 459 WP_239009926.1 hypothetical protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23635.41 Da        Isoelectric Point: 7.8263

>NTDB_id=99668 GZL_RS04325 WP_039629575.1 1134474..1135130(-) (vraR) [Streptomyces sp. 769]
MTIRVLVVDDEELFRCGLGNLVSMDPGISVVGAARDGAEAVRLAGTCRPDVVLMDIRMPGMDGLTATRKIHTLPDAPKVI
VLTTFDLDEYVHSALQAGAMGFLLKDTPPRDLVQAVKVVHKGEAMLAPTATRRLITHFSQRNSTLSDAARGRLSDLTERE
REVLYLVAEGMPNAEIAAKLSMTEATVKTHVSRSLNKLGCANRVQAALVVFDAGYRRP

Nucleotide


Download         Length: 657 bp        

>NTDB_id=99668 GZL_RS04325 WP_039629575.1 1134474..1135130(-) (vraR) [Streptomyces sp. 769]
ATGACCATCCGCGTTCTCGTCGTCGACGATGAAGAACTGTTCCGCTGCGGGCTGGGAAACCTCGTGAGCATGGATCCGGG
GATTTCCGTGGTCGGAGCGGCGCGTGACGGGGCGGAGGCCGTTCGCCTGGCCGGTACCTGCCGCCCCGATGTCGTACTGA
TGGACATCCGCATGCCGGGAATGGACGGTCTGACGGCGACGCGGAAGATCCACACCTTGCCGGACGCGCCCAAAGTCATC
GTGCTCACCACGTTCGATCTGGACGAGTACGTCCACTCCGCGCTCCAGGCGGGAGCCATGGGATTCCTGCTCAAGGACAC
GCCACCGCGGGACCTCGTCCAGGCGGTCAAGGTTGTCCATAAAGGCGAAGCCATGCTCGCCCCCACGGCGACCCGGCGGC
TGATCACGCACTTCTCCCAACGGAACTCGACGCTCTCCGATGCCGCACGGGGGCGCCTGTCCGACCTCACCGAACGTGAG
CGCGAGGTGCTGTACCTCGTCGCGGAGGGCATGCCCAATGCGGAAATCGCGGCAAAGTTGTCGATGACGGAAGCAACCGT
GAAAACGCACGTGAGCCGGTCACTGAACAAGCTCGGCTGCGCCAACCGCGTCCAGGCCGCGCTCGTGGTCTTTGACGCGG
GGTACCGCCGGCCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(156-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.654

98.165

0.399
  degU Bacillus subtilis subsp. subtilis str. 168

36.937

100

0.376

Multiple sequence alignment