Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   ELZ47_RS02595 Genome accession   NZ_LR134002
Coordinates   516439..516921 (-) Length   160 a.a.
NCBI ID   WP_002901276.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC 10904     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 511439..521921
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ47_RS02560 (NCTC10904_00507) recU 511447..512049 (-) 603 WP_126435188.1 Holliday junction resolvase RecU Machinery gene
  ELZ47_RS02565 (NCTC10904_00508) - 512117..512644 (+) 528 WP_048773574.1 DUF1273 domain-containing protein -
  ELZ47_RS02570 (NCTC10904_00509) gpsB 512716..513078 (+) 363 WP_050540601.1 cell division regulator GpsB -
  ELZ47_RS02585 (NCTC10904_00511) - 513752..514906 (+) 1155 WP_126435190.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  ELZ47_RS02590 (NCTC10904_00512) - 514919..516373 (+) 1455 WP_126435191.1 cell division site-positioning protein MapZ family protein -
  ELZ47_RS02595 (NCTC10904_00513) luxS 516439..516921 (-) 483 WP_002901276.1 S-ribosylhomocysteine lyase Regulator
  ELZ47_RS02600 (NCTC10904_00514) - 517287..518900 (+) 1614 WP_002893506.1 ribonuclease Y -
  ELZ47_RS02605 (NCTC10904_00515) gmk 519088..519720 (+) 633 WP_002893505.1 guanylate kinase -
  ELZ47_RS02610 (NCTC10904_00516) rpoZ 519746..520060 (+) 315 WP_002893503.1 DNA-directed RNA polymerase subunit omega -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17928.45 Da        Isoelectric Point: 4.8528

>NTDB_id=996676 ELZ47_RS02595 WP_002901276.1 516439..516921(-) (luxS) [Streptococcus sanguinis strain NCTC 10904]
MSKEVIVESFELDHTIVKAPYVRLIGEETGPKGDIISNFDIRLVQPNEDSIPTAGLHTIEHLLAMLIRKRIDGMIDCSPF
GCRTGFHMIMWGQHSSNQIAQVIKSCLEEIAETTSWEDVPGTTIESCGNYKDHSLFSAKEWAKLILSQGISDDAFERHVI

Nucleotide


Download         Length: 483 bp        

>NTDB_id=996676 ELZ47_RS02595 WP_002901276.1 516439..516921(-) (luxS) [Streptococcus sanguinis strain NCTC 10904]
ATGTCTAAAGAAGTTATCGTTGAAAGCTTTGAGCTGGATCACACCATTGTCAAAGCACCTTATGTCCGCCTTATCGGAGA
AGAAACTGGCCCTAAAGGCGACATCATTTCCAATTTTGATATCCGCTTGGTTCAGCCTAACGAAGATTCCATTCCAACTG
CCGGCCTGCATACCATCGAGCATTTGCTAGCCATGCTGATTCGCAAGCGCATTGATGGTATGATTGACTGCTCGCCTTTT
GGCTGCCGCACCGGTTTTCACATGATTATGTGGGGCCAACACAGTTCTAACCAGATTGCTCAGGTTATCAAATCCTGTCT
GGAAGAAATTGCTGAAACAACTAGCTGGGAAGATGTCCCTGGAACAACCATTGAATCCTGCGGAAACTACAAGGATCACA
GCCTCTTCTCAGCCAAAGAATGGGCTAAACTTATTCTCAGCCAAGGAATCTCAGATGATGCCTTTGAACGCCATGTGATT
TAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(7-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

39.333

93.75

0.369