Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   MKY04_RS12875 Genome accession   NZ_CP155468
Coordinates   2671598..2671912 (-) Length   104 a.a.
NCBI ID   WP_126295619.1    Uniprot ID   A0A3S0JJK8
Organism   Lysinibacillus telephonicus strain FSL R5-0572     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2666598..2676912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKY04_RS12840 (MKY04_12840) - 2667450..2668301 (+) 852 WP_346234547.1 DNA adenine methylase -
  MKY04_RS12845 (MKY04_12845) - 2668386..2668874 (+) 489 WP_346234548.1 ImmA/IrrE family metallo-endopeptidase -
  MKY04_RS12850 (MKY04_12850) - 2668958..2670169 (+) 1212 WP_346234549.1 tyrosine-type recombinase/integrase -
  MKY04_RS12855 (MKY04_12855) - 2670243..2670386 (-) 144 WP_346234550.1 hypothetical protein -
  MKY04_RS12860 (MKY04_12860) comGF 2670364..2670825 (-) 462 WP_346234551.1 competence type IV pilus minor pilin ComGF -
  MKY04_RS12865 (MKY04_12865) - 2670798..2671109 (-) 312 WP_126295621.1 hypothetical protein -
  MKY04_RS12870 (MKY04_12870) - 2671102..2671545 (-) 444 WP_246020444.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  MKY04_RS12875 (MKY04_12875) comGC 2671598..2671912 (-) 315 WP_126295619.1 competence type IV pilus major pilin ComGC Machinery gene
  MKY04_RS12880 (MKY04_12880) comGB 2671918..2672985 (-) 1068 WP_281274633.1 competence type IV pilus assembly protein ComGB -
  MKY04_RS12885 (MKY04_12885) comGA 2672966..2673979 (-) 1014 WP_126295617.1 competence type IV pilus ATPase ComGA -
  MKY04_RS12890 (MKY04_12890) - 2674280..2674981 (+) 702 WP_126295616.1 helix-turn-helix domain-containing protein -
  MKY04_RS12895 (MKY04_12895) - 2675106..2675348 (+) 243 WP_126295615.1 DUF2626 family protein -
  MKY04_RS12900 (MKY04_12900) - 2675469..2676113 (-) 645 WP_126295614.1 MBL fold metallo-hydrolase -
  MKY04_RS12905 (MKY04_12905) - 2676280..2676459 (+) 180 WP_126295613.1 DUF2759 domain-containing protein -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 11548.31 Da        Isoelectric Point: 4.1958

>NTDB_id=996675 MKY04_RS12875 WP_126295619.1 2671598..2671912(-) (comGC) [Lysinibacillus telephonicus strain FSL R5-0572]
MKFLKASNEDGFTLIEMLIVLLIISVLILITIPNVTRHFESINEKGCSALVQMVQGQVEAYKIDFKTTPTIQDLVDNEYL
NDDKTSCPNGDEIVIQSDGSVSVK

Nucleotide


Download         Length: 315 bp        

>NTDB_id=996675 MKY04_RS12875 WP_126295619.1 2671598..2671912(-) (comGC) [Lysinibacillus telephonicus strain FSL R5-0572]
GTGAAGTTTTTGAAAGCAAGTAATGAGGATGGATTTACATTAATAGAGATGCTAATTGTCCTTCTAATCATATCCGTGCT
TATTTTAATAACGATTCCGAATGTGACAAGACATTTTGAGTCTATAAATGAAAAAGGTTGTTCCGCACTTGTTCAGATGG
TACAAGGACAAGTGGAAGCCTATAAAATCGACTTTAAAACAACGCCTACTATTCAGGATTTAGTCGACAATGAATATTTA
AATGATGACAAAACATCATGCCCCAATGGTGATGAGATAGTCATTCAAAGTGATGGAAGTGTGAGTGTCAAATAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

51.02

94.231

0.481
  comGC Staphylococcus aureus MW2

39.806

99.038

0.394
  comGC Staphylococcus aureus N315

39.806

99.038

0.394

Multiple sequence alignment