Detailed information    

insolico Bioinformatically predicted

Overview


Name   hexA   Type   Machinery gene
Locus tag   ELZ47_RS00615 Genome accession   NZ_LR134002
Coordinates   111105..113654 (+) Length   849 a.a.
NCBI ID   WP_126434972.1    Uniprot ID   -
Organism   Streptococcus sanguinis strain NCTC 10904     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context


Location: 106105..118654
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ELZ47_RS00595 (NCTC10904_00116) - 107498..108016 (+) 519 WP_126434968.1 lantibiotic ABC transporter permease -
  ELZ47_RS00600 (NCTC10904_00117) nrdI 108079..108567 (+) 489 WP_126434969.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  ELZ47_RS00605 (NCTC10904_00118) argS 108600..110288 (-) 1689 WP_126434970.1 arginine--tRNA ligase -
  ELZ47_RS00610 (NCTC10904_00119) argR 110589..111026 (+) 438 WP_126434971.1 arginine repressor -
  ELZ47_RS00615 (NCTC10904_00120) hexA 111105..113654 (+) 2550 WP_126434972.1 DNA mismatch repair protein MutS Machinery gene
  ELZ47_RS00620 (NCTC10904_00121) - 113839..114534 (+) 696 WP_126434973.1 zinc ribbon domain-containing protein -
  ELZ47_RS00625 (NCTC10904_00122) - 114562..115872 (+) 1311 WP_126434974.1 SPFH domain-containing protein -
  ELZ47_RS00630 (NCTC10904_00123) hexB 116076..118019 (+) 1944 WP_126434975.1 DNA mismatch repair endonuclease MutL Machinery gene
  ELZ47_RS00635 (NCTC10904_00124) - 118068..118577 (-) 510 WP_164549528.1 RDD family protein -

Sequence


Protein


Download         Length: 849 a.a.        Molecular weight: 94836.09 Da        Isoelectric Point: 4.9663

>NTDB_id=996654 ELZ47_RS00615 WP_126434972.1 111105..113654(+) (hexA) [Streptococcus sanguinis strain NCTC 10904]
MAVEKLSPGMQQYLDIKKDYPDAFLLFRMGDFYELFYDDAVNAAQILEISLTSRNKNAENPIPMAGVPYHSAQQYIDVLV
ESGYKVAIAEQMEDPKEAKGVVKREVVQVITPGTVVDSSKPDSANNFLVALDYSEGLYGLAYMDLVTGEFQVTSLEDFAL
VCGEIRNLKAREVVLGYALPEAEEQVLAGQMNLLLSYVQTALDDVQLLGEELSPMERQAAGKLLEYVHRTQMRELSHLKK
AQHYEIKDFLQMDYATKASLDLTENARSGKKHGSLYWLMDETKTAMGGRMLRSWIQRPLIDEARISQRQNVVEVFLDHFF
ERSDLTESLKGVYDIERLASRVSFGKTNPKDLLQLAATLGNVPQIKAILQGIGSQHLARLIEGLDPIPELAGLISSAISP
DAPHIITEGNIIRTGFDETLDQYRLVLREGTGWIAELEVKERANSGISNLKIDYNKKDGYYFHVTNSQLAHVPSHFFRKA
TLKNSERFGTEELARIEGEMLEAREKSANLEYEIFMRVREEAGKYIQRLQALAQTLAAVDVLQSFAAVAEQGHLVRPVFT
SERRLEIEKGRHAVVEKVMGAQSYIPNSILLDQQTDIQLITGPNMSGKSTYMRQLAIIVIMAQMGSYVPAQSASLPLFDA
IFTRIGAADDLVSGQSTFMVEMMEANRAIRQASERSLILFDELGRGTATYDGMALAQAIIEHIHHYTGAKTLFATHYHEL
TALEDSLEHLENVHVATLEKDGQVTFLHKIEPGPADKSYGIHVAKIAGLPDKLLERADSILSHLESQDTGLGSEFPATSR
QKQSRVAEQISLFAEESENPVLTELRDLDIYNMTPLEVMAAVAELKKKL

Nucleotide


Download         Length: 2550 bp        

>NTDB_id=996654 ELZ47_RS00615 WP_126434972.1 111105..113654(+) (hexA) [Streptococcus sanguinis strain NCTC 10904]
ATGGCAGTAGAAAAGTTATCGCCCGGCATGCAGCAGTATTTGGATATCAAAAAGGACTATCCAGATGCTTTCTTGCTCTT
TCGGATGGGGGATTTTTATGAGTTGTTTTATGATGATGCGGTCAATGCCGCCCAGATTTTAGAGATTTCTCTCACCAGCC
GCAATAAAAATGCAGAAAATCCGATTCCCATGGCTGGAGTTCCCTATCATTCGGCACAGCAGTATATTGATGTTTTGGTC
GAGTCAGGCTATAAGGTAGCGATTGCGGAGCAGATGGAAGATCCCAAGGAAGCCAAGGGAGTTGTTAAGCGGGAGGTCGT
TCAGGTTATCACACCGGGGACGGTGGTGGACTCCAGTAAGCCGGACTCTGCGAATAACTTTCTGGTGGCTCTGGATTACT
CAGAGGGCCTCTATGGTCTGGCTTATATGGACTTGGTGACCGGTGAGTTTCAGGTGACTAGTTTAGAGGACTTTGCCTTG
GTCTGCGGGGAAATCCGTAATTTGAAGGCTAGGGAAGTGGTGCTGGGCTATGCCTTGCCAGAAGCTGAGGAGCAGGTCTT
GGCTGGGCAGATGAACCTTTTGCTGTCCTATGTACAGACAGCCTTGGATGATGTCCAGCTGCTGGGAGAGGAACTGTCTC
CGATGGAACGTCAGGCAGCGGGGAAATTGCTGGAGTATGTGCACCGGACCCAGATGAGGGAGCTCAGCCATTTGAAGAAG
GCCCAGCATTATGAAATCAAGGACTTTCTGCAAATGGACTATGCCACTAAGGCGAGTCTGGATTTGACAGAAAATGCTCG
CTCGGGCAAGAAGCACGGCAGTCTTTATTGGCTGATGGACGAGACTAAGACGGCCATGGGTGGCCGCATGCTGCGCTCTT
GGATCCAGCGTCCGCTGATTGATGAAGCGCGAATTAGCCAGCGACAGAATGTCGTTGAGGTTTTTCTGGATCATTTCTTT
GAGCGGAGTGATTTGACGGAGAGCCTCAAGGGAGTCTACGATATCGAGCGGCTGGCTAGTCGGGTGTCTTTTGGCAAGAC
CAATCCCAAGGATCTGCTGCAGCTGGCAGCTACATTGGGCAATGTGCCTCAGATTAAGGCTATCTTGCAAGGAATCGGTA
GCCAGCATCTAGCTCGTTTGATTGAGGGCTTGGATCCTATTCCAGAGTTGGCAGGCTTGATTAGCTCAGCTATTTCGCCG
GATGCGCCCCATATCATCACCGAGGGCAATATCATTCGGACCGGTTTTGATGAGACCTTGGATCAGTATAGGCTTGTGCT
GAGGGAGGGGACTGGATGGATTGCGGAGCTGGAAGTCAAAGAACGTGCTAACAGCGGCATCAGCAATCTGAAGATTGATT
ACAACAAAAAAGATGGTTACTATTTCCATGTGACCAATTCCCAGTTGGCTCATGTGCCTAGTCATTTCTTCCGCAAGGCG
ACCCTGAAAAATTCTGAGCGTTTCGGAACGGAGGAGCTGGCTCGGATTGAGGGAGAGATGTTGGAGGCGCGTGAAAAATC
TGCTAATTTGGAATACGAAATTTTCATGCGGGTTCGCGAGGAAGCTGGCAAATACATCCAGCGCTTGCAGGCCTTGGCAC
AAACACTGGCAGCTGTCGATGTTTTGCAGAGCTTTGCTGCAGTGGCGGAGCAGGGACATTTGGTGCGCCCTGTCTTTACT
TCGGAGCGCCGTCTGGAGATTGAAAAAGGTCGGCATGCTGTTGTGGAAAAGGTCATGGGTGCCCAGAGTTACATTCCAAA
TAGTATTCTGCTGGACCAGCAAACGGACATCCAGCTCATTACCGGGCCTAATATGAGCGGGAAGTCGACTTATATGCGCC
AGCTGGCTATCATCGTCATTATGGCACAGATGGGATCTTATGTGCCCGCTCAGTCTGCCAGTCTGCCACTATTCGATGCG
ATTTTTACTCGCATCGGTGCAGCGGATGATTTGGTGTCCGGCCAGTCTACCTTTATGGTGGAGATGATGGAGGCCAATCG
GGCCATTCGACAGGCCAGCGAGCGTTCGCTCATTCTCTTTGATGAGCTGGGGCGTGGAACGGCGACTTATGATGGGATGG
CGCTGGCTCAGGCTATTATCGAGCATATTCATCATTATACTGGGGCCAAGACCCTCTTTGCCACCCACTATCATGAGCTG
ACAGCCTTAGAGGATAGCTTGGAGCATTTGGAAAATGTCCATGTGGCAACCTTGGAAAAGGACGGGCAGGTGACTTTCCT
GCATAAGATTGAGCCGGGTCCGGCTGACAAGTCTTACGGAATCCATGTGGCGAAGATTGCCGGACTTCCTGATAAATTGC
TGGAGCGGGCAGATAGCATTTTGAGCCATCTGGAAAGTCAGGATACAGGACTAGGCTCAGAGTTTCCTGCTACATCCAGA
CAGAAGCAGTCACGAGTGGCTGAGCAGATCTCTCTTTTCGCAGAAGAGTCGGAAAATCCAGTCCTAACTGAACTCCGAGA
CTTGGACATATACAATATGACTCCTCTGGAAGTCATGGCGGCGGTAGCCGAGCTCAAGAAGAAGTTGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexA Streptococcus pneumoniae R6

77.621

100

0.776

  mutS Pseudomonas stutzeri strain ATCC 17587

38.623

100

0.39