Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QMM73_RS07895 Genome accession   NZ_AP027135
Coordinates   1630583..1631269 (-) Length   228 a.a.
NCBI ID   WP_072507245.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JP089     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1625583..1636269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM73_RS07875 (JP089_14930) rpsT 1626497..1626748 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  QMM73_RS07880 (JP089_14940) holA 1626793..1627767 (-) 975 WP_061838738.1 DNA polymerase III subunit delta -
  QMM73_RS07885 (JP089_14950) comEC 1627824..1630025 (-) 2202 WP_061838737.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QMM73_RS07890 (JP089_14960) - 1630030..1630491 (-) 462 WP_000439693.1 ComE operon protein 2 -
  QMM73_RS07895 (JP089_14970) comEA 1630583..1631269 (-) 687 WP_072507245.1 ComEA family DNA-binding protein Machinery gene
  QMM73_RS07900 (JP089_14980) - 1631309..1632025 (-) 717 WP_061838735.1 class I SAM-dependent methyltransferase -
  QMM73_RS07905 (JP089_14990) rsfS 1632028..1632381 (-) 354 WP_001088022.1 ribosome silencing factor -
  QMM73_RS07910 (JP089_15000) yqeK 1632382..1632966 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QMM73_RS07915 (JP089_15010) nadD 1632956..1633525 (-) 570 WP_000725167.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  QMM73_RS07920 (JP089_15020) yhbY 1633528..1633818 (-) 291 WP_000955235.1 ribosome assembly RNA-binding protein YhbY -
  QMM73_RS07925 (JP089_15030) aroE 1633822..1634628 (-) 807 WP_000666748.1 shikimate dehydrogenase -
  QMM73_RS07930 (JP089_15040) yqeH 1634642..1635742 (-) 1101 WP_001280141.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25891.55 Da        Isoelectric Point: 9.5273

>NTDB_id=99651 QMM73_RS07895 WP_072507245.1 1630583..1631269(-) (comEA) [Staphylococcus aureus strain JP089]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHEKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=99651 QMM73_RS07895 WP_072507245.1 1630583..1631269(-) (comEA) [Staphylococcus aureus strain JP089]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGTACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGAAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

99.119

99.561

0.987
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969

Multiple sequence alignment