Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   QMM73_RS07655 Genome accession   NZ_AP027135
Coordinates   1583974..1584420 (-) Length   148 a.a.
NCBI ID   WP_072507247.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JP089     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1578974..1589420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM73_RS07625 (JP089_14430) gcvPA 1579900..1581246 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QMM73_RS07630 (JP089_14440) gcvT 1581266..1582357 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  QMM73_RS07635 (JP089_14450) - 1582516..1583040 (-) 525 WP_001015117.1 shikimate kinase -
  QMM73_RS07640 - 1583030..1583176 (-) 147 WP_001789879.1 hypothetical protein -
  QMM73_RS07645 (JP089_14460) comGF 1583273..1583770 (-) 498 WP_072507248.1 competence type IV pilus minor pilin ComGF Machinery gene
  QMM73_RS07650 (JP089_14470) comGE 1583688..1583987 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  QMM73_RS07655 (JP089_14480) comGD 1583974..1584420 (-) 447 WP_072507247.1 competence type IV pilus minor pilin ComGD Machinery gene
  QMM73_RS07660 (JP089_14490) comGC 1584398..1584709 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QMM73_RS07665 (JP089_14500) comGB 1584723..1585793 (-) 1071 WP_281961672.1 competence type IV pilus assembly protein ComGB Machinery gene
  QMM73_RS07670 comGA 1585765..1586739 (-) 975 Protein_1505 competence type IV pilus ATPase ComGA -
  QMM73_RS07675 (JP089_14530) - 1586791..1587414 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QMM73_RS07680 (JP089_14540) - 1587411..1587740 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QMM73_RS07685 (JP089_14550) - 1587740..1588726 (-) 987 WP_000161315.1 ROK family glucokinase -
  QMM73_RS07690 (JP089_14560) - 1588723..1588926 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17147.29 Da        Isoelectric Point: 10.3312

>NTDB_id=99646 QMM73_RS07655 WP_072507247.1 1583974..1584420(-) (comGD) [Staphylococcus aureus strain JP089]
MEKQLQIRKQSAFTMIEILVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=99646 QMM73_RS07655 WP_072507247.1 1583974..1584420(-) (comGD) [Staphylococcus aureus strain JP089]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATACTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment