Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   QMM73_RS07665 Genome accession   NZ_AP027135
Coordinates   1584723..1585793 (-) Length   356 a.a.
NCBI ID   WP_281961672.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JP089     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1579723..1590793
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM73_RS07625 (JP089_14430) gcvPA 1579900..1581246 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  QMM73_RS07630 (JP089_14440) gcvT 1581266..1582357 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  QMM73_RS07635 (JP089_14450) - 1582516..1583040 (-) 525 WP_001015117.1 shikimate kinase -
  QMM73_RS07640 - 1583030..1583176 (-) 147 WP_001789879.1 hypothetical protein -
  QMM73_RS07645 (JP089_14460) comGF 1583273..1583770 (-) 498 WP_072507248.1 competence type IV pilus minor pilin ComGF Machinery gene
  QMM73_RS07650 (JP089_14470) comGE 1583688..1583987 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  QMM73_RS07655 (JP089_14480) comGD 1583974..1584420 (-) 447 WP_072507247.1 competence type IV pilus minor pilin ComGD Machinery gene
  QMM73_RS07660 (JP089_14490) comGC 1584398..1584709 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QMM73_RS07665 (JP089_14500) comGB 1584723..1585793 (-) 1071 WP_281961672.1 competence type IV pilus assembly protein ComGB Machinery gene
  QMM73_RS07670 comGA 1585765..1586739 (-) 975 Protein_1505 competence type IV pilus ATPase ComGA -
  QMM73_RS07675 (JP089_14530) - 1586791..1587414 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  QMM73_RS07680 (JP089_14540) - 1587411..1587740 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QMM73_RS07685 (JP089_14550) - 1587740..1588726 (-) 987 WP_000161315.1 ROK family glucokinase -
  QMM73_RS07690 (JP089_14560) - 1588723..1588926 (-) 204 WP_000087561.1 YqgQ family protein -
  QMM73_RS07695 (JP089_14570) - 1588907..1590370 (-) 1464 WP_001017867.1 rhomboid family intramembrane serine protease -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41471.95 Da        Isoelectric Point: 10.1030

>NTDB_id=99648 QMM73_RS07665 WP_281961672.1 1584723..1585793(-) (comGB) [Staphylococcus aureus strain JP089]
MKLQWINTFKLHSKKRQLSKAQQIDLLSNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEIPNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNNLNMLNKIKFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=99648 QMM73_RS07665 WP_281961672.1 1584723..1585793(-) (comGB) [Staphylococcus aureus strain JP089]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTCAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGTACCACCATTCTAAGTGAAATTCCAAATGGTGCACCATGCAATCAAATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATTATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCTATCTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAATTTAAATATGCTCAATAAGATAAAATTTGTGATGAAACTACCGCTAATAT
CAGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTGTTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTGCCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGGAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTAGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(28-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.438

100

0.994
  comGB Staphylococcus aureus N315

99.438

100

0.994

Multiple sequence alignment