Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   QMM73_RS04830 Genome accession   NZ_AP027135
Coordinates   979723..980709 (+) Length   328 a.a.
NCBI ID   WP_061838501.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JP089     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 974723..985709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM73_RS04805 (JP089_09030) opp4B 974936..975898 (+) 963 WP_000915997.1 oligopeptide ABC transporter permease -
  QMM73_RS04810 (JP089_09040) opp4C 975910..976791 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  QMM73_RS04815 (JP089_09050) trpS 976833..977822 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  QMM73_RS04820 (JP089_09060) spxA 978117..978512 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  QMM73_RS04825 (JP089_09070) mecA 978883..979602 (+) 720 WP_001217728.1 adaptor protein MecA -
  QMM73_RS04830 (JP089_09080) coiA 979723..980709 (+) 987 WP_061838501.1 competence protein CoiA family protein Machinery gene
  QMM73_RS04835 (JP089_09090) pepF 980757..982565 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  QMM73_RS04840 (JP089_09100) yjbH 983025..983831 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  QMM73_RS04845 (JP089_09110) - 983854..984219 (-) 366 WP_000214068.1 truncated hemoglobin YjbI -
  QMM73_RS04850 (JP089_09120) - 984323..984916 (-) 594 WP_000224622.1 CYTH domain-containing protein -
  QMM73_RS04855 (JP089_09130) - 985102..985449 (+) 348 WP_001242102.1 hypothetical protein -

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 38839.38 Da        Isoelectric Point: 9.5881

>NTDB_id=99637 QMM73_RS04830 WP_061838501.1 979723..980709(+) (coiA) [Staphylococcus aureus strain JP089]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSLFINPFTRKL
HTFNLEKKQTMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=99637 QMM73_RS04830 WP_061838501.1 979723..980709(+) (coiA) [Staphylococcus aureus strain JP089]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTTTGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAACAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTTGCTGA
AAAAAGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCCGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(6-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

98.476

100

0.985
  coiA Staphylococcus aureus N315

98.476

100

0.985

Multiple sequence alignment