Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABDA66_RS04885 Genome accession   NZ_CP155431
Coordinates   963953..964501 (-) Length   182 a.a.
NCBI ID   WP_057773934.1    Uniprot ID   -
Organism   Pediococcus inopinatus strain DMPI11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 958953..969501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABDA66_RS04865 (ABDA66_04845) - 959923..961284 (-) 1362 Protein_929 FAD-dependent oxidoreductase -
  ABDA66_RS04870 (ABDA66_04850) - 961317..961997 (-) 681 WP_057775236.1 EAL domain-containing protein -
  ABDA66_RS04875 (ABDA66_04855) - 962320..963609 (+) 1290 WP_323709046.1 ISL3 family transposase -
  ABDA66_RS04880 (ABDA66_04860) rpsR 963686..963928 (-) 243 WP_057773936.1 30S ribosomal protein S18 -
  ABDA66_RS04885 (ABDA66_04865) ssb 963953..964501 (-) 549 WP_057773934.1 single-stranded DNA-binding protein Machinery gene
  ABDA66_RS04890 (ABDA66_04870) rpsF 964540..964830 (-) 291 WP_057773932.1 30S ribosomal protein S6 -
  ABDA66_RS04895 (ABDA66_04875) gyrA 965017..967512 (-) 2496 WP_057773941.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 20129.55 Da        Isoelectric Point: 4.5268

>NTDB_id=996313 ABDA66_RS04885 WP_057773934.1 963953..964501(-) (ssb) [Pediococcus inopinatus strain DMPI11]
MINRTVLVGRLTRDPDLRYTNSGAAVATFTVAVNRQFTNSQGEREADFINCVIWRKAAENFANFTHKGSLIGVDGRIQTR
SYENQQNQRVYVTEVVVENFSLLESRSQSEQRQRQENNSGFQSNAPQSSENTNPFDAGQGNTNSSNNQSNSNGPASSAST
NPNDPFANNGEQIDISDDDLPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=996313 ABDA66_RS04885 WP_057773934.1 963953..964501(-) (ssb) [Pediococcus inopinatus strain DMPI11]
ATGATAAACCGAACAGTTCTTGTTGGACGCTTAACCAGAGACCCTGATTTACGATACACCAACAGCGGTGCTGCAGTTGC
AACCTTTACAGTTGCAGTTAATCGGCAATTTACGAACTCACAAGGAGAACGTGAAGCTGATTTTATTAACTGTGTTATTT
GGCGAAAAGCCGCAGAAAATTTCGCTAACTTTACCCATAAAGGTTCATTGATTGGAGTTGATGGGCGGATTCAAACCCGG
TCATATGAAAATCAACAGAATCAGCGGGTATATGTTACGGAAGTTGTCGTTGAAAACTTTTCATTGTTGGAATCCCGTTC
TCAATCCGAACAGCGTCAACGGCAGGAGAACAACTCGGGATTTCAAAGCAATGCTCCGCAATCATCCGAAAATACCAATC
CGTTTGATGCCGGGCAAGGAAACACTAATAGCAGTAATAACCAGAGCAATAGCAATGGTCCTGCTTCAAGTGCCAGTACG
AACCCGAACGATCCGTTTGCAAATAACGGCGAACAAATTGATATTTCCGACGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

67.027

100

0.681
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.831

100

0.571

Multiple sequence alignment