Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QMM94_RS10550 Genome accession   NZ_AP027134
Coordinates   2141045..2141440 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JP008     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2136045..2146440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM94_RS10525 (JP008_20110) thiE 2136644..2137285 (-) 642 WP_154283798.1 thiamine phosphate synthase -
  QMM94_RS10530 (JP008_20120) thiM 2137287..2138078 (-) 792 WP_001108489.1 hydroxyethylthiazole kinase -
  QMM94_RS10535 (JP008_20130) thiD 2138062..2138892 (-) 831 WP_209205796.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QMM94_RS10540 (JP008_20140) tenA 2138885..2139574 (-) 690 WP_154283796.1 thiaminase II -
  QMM94_RS10545 (JP008_20150) sceD 2139961..2140656 (-) 696 WP_000752002.1 lytic transglycosylase SceD -
  QMM94_RS10550 (JP008_20160) ssb 2141045..2141440 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  QMM94_RS10555 (JP008_20170) - 2141634..2142074 (+) 441 WP_000846750.1 YwpF-like family protein -
  QMM94_RS10560 (JP008_20180) fabZ 2142132..2142572 (-) 441 WP_154283794.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QMM94_RS10565 (JP008_20190) murA 2142606..2143871 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QMM94_RS10570 (JP008_20200) - 2143982..2144215 (-) 234 WP_000384523.1 DUF1146 family protein -
  QMM94_RS10575 - 2144347..2144439 (-) 93 WP_031789435.1 hypothetical protein -
  QMM94_RS10580 (JP008_20210) - 2144831..2145235 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=99621 QMM94_RS10550 WP_000932694.1 2141045..2141440(-) (ssb) [Staphylococcus aureus strain JP008]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=99621 QMM94_RS10550 WP_000932694.1 2141045..2141440(-) (ssb) [Staphylococcus aureus strain JP008]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992

Multiple sequence alignment