Detailed information
Bioinformatically predicted
Overview
| Name | opaR | Type | Regulator |
| Locus tag | AAFX13_RS22365 | Genome accession | NZ_CP155084 |
| Coordinates | 2989776..2990390 (+) | Length | 204 a.a. |
| NCBI ID | WP_069533148.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain TBV028 | ||
| Function | regulation of Dns (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2984776..2995390
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAFX13_RS22345 (AAFX13_22350) | - | 2985063..2985980 (-) | 918 | WP_005462584.1 | ABC transporter ATP-binding protein | - |
| AAFX13_RS22350 (AAFX13_22355) | - | 2986232..2987902 (-) | 1671 | WP_069533147.1 | SulP family inorganic anion transporter | - |
| AAFX13_RS22355 (AAFX13_22360) | can | 2988186..2988854 (+) | 669 | WP_005462578.1 | carbonate dehydratase | - |
| AAFX13_RS22360 (AAFX13_22365) | hpt | 2988927..2989457 (-) | 531 | WP_005479701.1 | hypoxanthine phosphoribosyltransferase | - |
| AAFX13_RS22365 (AAFX13_22370) | opaR | 2989776..2990390 (+) | 615 | WP_069533148.1 | transcriptional regulator OpaR | Regulator |
| AAFX13_RS22370 (AAFX13_22375) | lpdA | 2990518..2991945 (-) | 1428 | WP_005479684.1 | dihydrolipoyl dehydrogenase | - |
| AAFX13_RS22375 (AAFX13_22380) | aceF | 2992214..2994109 (-) | 1896 | WP_069533149.1 | pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase | - |
Sequence
Protein
Download Length: 204 a.a. Molecular weight: 23634.89 Da Isoelectric Point: 5.8297
>NTDB_id=996206 AAFX13_RS22365 WP_069533148.1 2989776..2990390(+) (opaR) [Vibrio parahaemolyticus strain TBV028]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELQELVSAYLDMLCIYNREH
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELQELVSAYLDMLCIYNREH
Nucleotide
Download Length: 615 bp
>NTDB_id=996206 AAFX13_RS22365 WP_069533148.1 2989776..2990390(+) (opaR) [Vibrio parahaemolyticus strain TBV028]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GACAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGACCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGCA
AGAGCTCGTGAGCGCTTACCTGGATATGCTTTGCATCTACAATCGCGAACACTAA
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GACAATATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTATTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGACCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCCGAGTTGCA
AGAGCTCGTGAGCGCTTACCTGGATATGCTTTGCATCTACAATCGCGAACACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| opaR | Vibrio parahaemolyticus RIMD 2210633 |
99.51 |
100 |
0.995 |
| hapR | Vibrio cholerae C6706 |
72.222 |
97.059 |
0.701 |
| hapR | Vibrio cholerae strain A1552 |
72.222 |
97.059 |
0.701 |