Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   QMM94_RS07835 Genome accession   NZ_AP027134
Coordinates   1636567..1637253 (-) Length   228 a.a.
NCBI ID   WP_209205770.1    Uniprot ID   -
Organism   Staphylococcus aureus strain JP008     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1631567..1642253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM94_RS07815 (JP008_15260) rpsT 1632481..1632732 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  QMM94_RS07820 (JP008_15270) holA 1632777..1633751 (-) 975 WP_001282562.1 DNA polymerase III subunit delta -
  QMM94_RS07825 (JP008_15280) comEC 1633808..1636009 (-) 2202 WP_195758890.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  QMM94_RS07830 (JP008_15290) - 1636014..1636475 (-) 462 WP_000439693.1 ComE operon protein 2 -
  QMM94_RS07835 (JP008_15300) comEA 1636567..1637253 (-) 687 WP_209205770.1 ComEA family DNA-binding protein Machinery gene
  QMM94_RS07840 (JP008_15310) - 1637293..1638009 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  QMM94_RS07845 (JP008_15320) rsfS 1638012..1638365 (-) 354 WP_001088020.1 ribosome silencing factor -
  QMM94_RS07850 (JP008_15330) yqeK 1638366..1638950 (-) 585 WP_001019325.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  QMM94_RS07855 (JP008_15340) nadD 1638940..1639509 (-) 570 WP_154283756.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  QMM94_RS07860 (JP008_15350) yhbY 1639512..1639802 (-) 291 WP_154283755.1 ribosome assembly RNA-binding protein YhbY -
  QMM94_RS07865 (JP008_15360) aroE 1639806..1640612 (-) 807 WP_000666750.1 shikimate dehydrogenase -
  QMM94_RS07870 (JP008_15370) yqeH 1640626..1641726 (-) 1101 WP_209205771.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25838.53 Da        Isoelectric Point: 9.6750

>NTDB_id=99609 QMM94_RS07835 WP_209205770.1 1636567..1637253(-) (comEA) [Staphylococcus aureus strain JP008]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENSSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVNVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=99609 QMM94_RS07835 WP_209205770.1 1636567..1637253(-) (comEA) [Staphylococcus aureus strain JP008]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAGGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACGTCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGAACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

99.119

99.561

0.987
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969

Multiple sequence alignment