Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   T556_RS03130 Genome accession   NZ_CP003974
Coordinates   518778..519440 (+) Length   220 a.a.
NCBI ID   WP_041421240.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae NG-k51.05     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 513778..524440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  T556_RS03095 (T556_02800) cysT 513955..514784 (-) 830 Protein_512 sulfate ABC transporter permease subunit CysT -
  T556_RS03100 (T556_02810) - 514970..515302 (+) 333 WP_003687908.1 hypothetical protein -
  T556_RS03105 (T556_02815) - 515632..516141 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  T556_RS03115 (T556_02820) - 516373..516954 (-) 582 WP_003690895.1 superoxide dismutase -
  T556_RS03125 (T556_02825) dnaB 517118..518521 (+) 1404 WP_012503477.1 replicative DNA helicase -
  T556_RS15065 - 518515..518627 (-) 113 Protein_517 IS5/IS1182 family transposase -
  T556_RS03130 (T556_02830) pilH 518778..519440 (+) 663 WP_041421240.1 GspH/FimT family pseudopilin Machinery gene
  T556_RS03135 (T556_02835) pilV/pilI 519472..520086 (+) 615 WP_012503479.1 type IV pilus modification protein PilV Regulator
  T556_RS03140 (T556_02840) pilJ 520083..521042 (+) 960 WP_012503480.1 PilW family protein Machinery gene
  T556_RS03145 (T556_02845) pilK 521021..521632 (+) 612 WP_012503481.1 pilus assembly PilX family protein Machinery gene
  T556_RS03150 (T556_02850) pilL 521634..522107 (+) 474 WP_012503482.1 PilX family type IV pilin Machinery gene
  T556_RS03155 (T556_02855) - 522177..522485 (-) 309 WP_003706588.1 AzlD family protein -
  T556_RS03160 (T556_02860) - 522482..523193 (-) 712 Protein_524 AzlC family ABC transporter permease -
  T556_RS03165 (T556_02865) dut 523359..523811 (+) 453 WP_003701071.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24496.91 Da        Isoelectric Point: 9.6166

>NTDB_id=99606 T556_RS03130 WP_041421240.1 518778..519440(+) (pilH) [Neisseria gonorrhoeae NG-k51.05]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGASN
NRCDFSKKGWGMLAFGDKNDNKAYDGDATDVFLRSVVLNDTDDSRINYTFNHIAFGSSQPKADRVVWTFNQNGTFGYLPD
QNLKNNSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLINSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=99606 T556_RS03130 WP_041421240.1 518778..519440(+) (pilH) [Neisseria gonorrhoeae NG-k51.05]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATCGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGTCCAAC
AATAGATGTGACTTCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCGACGGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTACACCTTCAATCATATCG
CTTTCGGTTCGTCTCAGCCGAAAGCCGACCGTGTAGTTTGGACTTTCAACCAAAACGGGACATTCGGCTATTTGCCCGAT
CAGAATCTCAAGAATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGTTTC
AGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTAACAGCAGCGGCAGGGTCGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

95.909

100

0.959

Multiple sequence alignment