Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   QMM94_RS07605 Genome accession   NZ_AP027134
Coordinates   1589720..1590694 (-) Length   324 a.a.
NCBI ID   WP_000697215.1    Uniprot ID   A0AAE8P9U4
Organism   Staphylococcus aureus strain JP008     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1584720..1595694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QMM94_RS07565 (JP008_14750) gcvT 1585221..1586312 (-) 1092 WP_000093355.1 glycine cleavage system aminomethyltransferase GcvT -
  QMM94_RS07570 (JP008_14760) - 1586471..1586995 (-) 525 WP_001015122.1 shikimate kinase -
  QMM94_RS07575 - 1586985..1587131 (-) 147 WP_001789879.1 hypothetical protein -
  QMM94_RS07580 (JP008_14780) comGF 1587228..1587725 (-) 498 WP_154284346.1 competence type IV pilus minor pilin ComGF Machinery gene
  QMM94_RS07585 (JP008_14790) comGE 1587643..1587942 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  QMM94_RS07590 (JP008_14800) comGD 1587929..1588333 (-) 405 WP_209205909.1 competence type IV pilus minor pilin ComGD Machinery gene
  QMM94_RS07595 (JP008_14810) comGC 1588353..1588664 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  QMM94_RS07600 (JP008_14820) comGB 1588678..1589748 (-) 1071 Protein_1492 competence type IV pilus assembly protein ComGB -
  QMM94_RS07605 (JP008_14830) comGA 1589720..1590694 (-) 975 WP_000697215.1 competence type IV pilus ATPase ComGA Machinery gene
  QMM94_RS07610 (JP008_14840) - 1590746..1591369 (-) 624 WP_267815017.1 MBL fold metallo-hydrolase -
  QMM94_RS07615 (JP008_14850) - 1591366..1591695 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  QMM94_RS07620 (JP008_14860) - 1591695..1592681 (-) 987 WP_000161315.1 ROK family glucokinase -
  QMM94_RS07625 (JP008_14870) - 1592678..1592881 (-) 204 WP_000087561.1 YqgQ family protein -
  QMM94_RS07630 (JP008_14880) - 1592862..1594325 (-) 1464 WP_158172984.1 rhomboid family intramembrane serine protease -
  QMM94_RS07635 (JP008_14890) - 1594337..1594876 (-) 540 WP_000164551.1 5-formyltetrahydrofolate cyclo-ligase -
  QMM94_RS07640 (JP008_14900) rpmG 1595085..1595234 (-) 150 WP_001265709.1 50S ribosomal protein L33 -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36853.90 Da        Isoelectric Point: 8.8516

>NTDB_id=99606 QMM94_RS07605 WP_000697215.1 1589720..1590694(-) (comGA) [Staphylococcus aureus strain JP008]
MKILFQEIINKAIEMKASDVHFIPVKNEVSIKFRINDNLEQYEQIGNGIYQKLLVYMKFQAGLDVSTQQVAQSGRYSYHF
NKIYFLRISTLPLSLGQESCVIRIVPQFFQQQKSTYKFNDFKHLMNKKQGLLLFSGPTGSGKSTLMYQMVSYANKALNLN
VISIEDPVEMQIPGIVQINVNDKAGINYVNSFKAILRCDPDVILIGEIRDKDVAKCVIQASLSGHLVLTTLHATDCKGAI
LRLLEMGVSVQELIQATNLIINQRLVTTIKQQRQLVCEILSQQQLRYFFSHNHSLPSSFKNLEDKLDDMTKAGVICETTM
DKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=99606 QMM94_RS07605 WP_000697215.1 1589720..1590694(-) (comGA) [Staphylococcus aureus strain JP008]
TTGAAGATTCTATTTCAAGAAATAATTAATAAAGCGATAGAAATGAAAGCGAGTGATGTACATTTTATTCCAGTTAAAAA
TGAAGTAAGTATTAAATTTAGAATTAATGATAACTTGGAGCAGTATGAACAAATTGGGAATGGCATTTATCAAAAGTTAT
TAGTTTATATGAAGTTTCAAGCTGGGCTTGATGTTTCTACACAGCAAGTCGCACAGAGCGGTCGATATAGTTACCATTTC
AATAAAATTTATTTTTTGAGAATATCAACATTACCATTGTCACTTGGCCAAGAAAGTTGTGTTATCAGAATTGTACCTCA
ATTTTTTCAACAACAGAAATCAACTTATAAATTCAATGATTTTAAACACCTCATGAACAAGAAACAAGGATTACTATTGT
TTAGTGGACCAACTGGTTCAGGAAAGAGTACATTAATGTATCAAATGGTCTCATACGCGAATAAAGCCTTGAATTTAAAT
GTAATTTCTATAGAGGATCCTGTAGAGATGCAAATTCCTGGTATTGTTCAAATTAATGTGAATGATAAAGCTGGCATTAA
CTATGTAAATTCGTTTAAAGCTATTTTAAGATGTGATCCCGATGTTATTTTAATAGGTGAAATCAGAGATAAAGATGTTG
CCAAGTGTGTTATACAGGCTAGTTTAAGTGGTCACCTTGTTCTGACTACATTGCATGCAACTGATTGTAAAGGTGCTATT
TTAAGGCTATTAGAAATGGGTGTTTCTGTACAAGAATTGATACAGGCAACTAACTTAATTATAAACCAACGACTTGTAAC
TACTATTAAGCAACAGCGACAATTAGTATGTGAAATTCTATCTCAGCAACAACTCCGATATTTCTTTTCCCATAATCATT
CATTACCATCATCATTTAAGAACTTAGAAGATAAACTTGATGATATGACAAAAGCAGGTGTCATTTGTGAAACTACAATG
GATAAATACATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

99.383

100

0.994
  comGA Staphylococcus aureus N315

99.383

100

0.994

Multiple sequence alignment