Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ABC965_RS10405 Genome accession   NZ_CP155063
Coordinates   2138485..2138880 (-) Length   131 a.a.
NCBI ID   WP_046597518.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC130-MRSA-XI     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2133485..2143880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC965_RS10380 (ABC965_10380) thiE 2134083..2134724 (-) 642 WP_000483158.1 thiamine phosphate synthase -
  ABC965_RS10385 (ABC965_10385) thiM 2134729..2135517 (-) 789 WP_001108485.1 hydroxyethylthiazole kinase -
  ABC965_RS10390 (ABC965_10390) thiD 2135501..2136331 (-) 831 WP_000594955.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  ABC965_RS10395 (ABC965_10395) tenA 2136324..2137013 (-) 690 WP_000396067.1 thiaminase II -
  ABC965_RS10400 (ABC965_10400) sceD 2137400..2138095 (-) 696 WP_000752002.1 lytic transglycosylase SceD -
  ABC965_RS10405 (ABC965_10405) ssb 2138485..2138880 (-) 396 WP_046597518.1 single-stranded DNA-binding protein Machinery gene
  ABC965_RS10410 (ABC965_10410) - 2139074..2139514 (+) 441 WP_000846746.1 YwpF-like family protein -
  ABC965_RS10415 (ABC965_10415) fabZ 2139571..2140011 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  ABC965_RS10420 (ABC965_10420) murA 2140045..2141310 (-) 1266 WP_000358002.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  ABC965_RS10425 (ABC965_10425) - 2141421..2141654 (-) 234 WP_000384523.1 DUF1146 family protein -
  ABC965_RS10430 (ABC965_10430) - 2141786..2141863 (-) 78 Protein_2012 hypothetical protein -
  ABC965_RS10435 (ABC965_10435) - 2142273..2142677 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15072.18 Da        Isoelectric Point: 5.6824

>NTDB_id=996069 ABC965_RS10405 WP_046597518.1 2138485..2138880(-) (ssb) [Staphylococcus aureus strain CC130-MRSA-XI]
MLNKIVIVGRLMKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=996069 ABC965_RS10405 WP_046597518.1 2138485..2138880(-) (ssb) [Staphylococcus aureus strain CC130-MRSA-XI]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGATGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985

Multiple sequence alignment