Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   ABC965_RS04700 Genome accession   NZ_CP155063
Coordinates   985593..986579 (+) Length   328 a.a.
NCBI ID   WP_000959277.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC130-MRSA-XI     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 980593..991579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC965_RS04675 (ABC965_04675) opp4B 980796..981758 (+) 963 WP_000593417.1 oligopeptide ABC transporter permease -
  ABC965_RS04680 (ABC965_04680) opp4C 981770..982651 (+) 882 WP_001180271.1 oligopeptide ABC transporter permease -
  ABC965_RS04685 (ABC965_04685) trpS 982693..983682 (-) 990 WP_000448929.1 tryptophan--tRNA ligase -
  ABC965_RS04690 (ABC965_04690) spxA 983977..984372 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  ABC965_RS04695 (ABC965_04695) mecA 984753..985472 (+) 720 WP_001217727.1 adaptor protein MecA -
  ABC965_RS04700 (ABC965_04700) coiA 985593..986579 (+) 987 WP_000959277.1 competence protein CoiA family protein Machinery gene
  ABC965_RS04705 (ABC965_04705) pepF 986627..988435 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  ABC965_RS04710 (ABC965_04710) yjbH 988896..989702 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  ABC965_RS04715 (ABC965_04715) - 989725..990090 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  ABC965_RS04720 (ABC965_04720) - 990194..990787 (-) 594 WP_000224616.1 CYTH domain-containing protein -
  ABC965_RS04725 (ABC965_04725) - 990973..991320 (+) 348 WP_001242107.1 hypothetical protein -

Sequence


Protein


Download         Length: 328 a.a.        Molecular weight: 38695.27 Da        Isoelectric Point: 9.5127

>NTDB_id=996042 ABC965_RS04700 WP_000959277.1 985593..986579(+) (coiA) [Staphylococcus aureus strain CC130-MRSA-XI]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMIQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKGNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLLSDNLNYFKLKKFIVALDSKTAIIEKLINNYLNICSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=996042 ABC965_RS04700 WP_000959277.1 985593..986579(+) (coiA) [Staphylococcus aureus strain CC130-MRSA-XI]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTTAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAGGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTTG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTACTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGATAGCAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

96.951

100

0.97

  coiA Staphylococcus aureus N315

96.951

100

0.97


Multiple sequence alignment