Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EW036_RS06655 Genome accession   NZ_LR130545
Coordinates   1343657..1344394 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain B36 isolate B36     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1338657..1349394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW036_RS06625 yfiL 1338816..1339181 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  EW036_RS06630 aroF 1339391..1340461 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  EW036_RS06635 tyrA 1340472..1341593 (+) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  EW036_RS06640 pheA 1341636..1342796 (-) 1161 WP_000200140.1 bifunctional chorismate mutase/prephenate dehydratase -
  EW036_RS06645 pheL 1342895..1342942 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  EW036_RS06650 raiA 1343046..1343387 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  EW036_RS06655 comL 1343657..1344394 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  EW036_RS06660 rluD 1344529..1345509 (+) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EW036_RS06665 yfiH 1345506..1346237 (+) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  EW036_RS06670 clpC 1346367..1348940 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=996032 EW036_RS06655 WP_000197686.1 1343657..1344394(-) (comL) [Escherichia coli strain B36 isolate B36]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=996032 EW036_RS06655 WP_000197686.1 1343657..1344394(-) (comL) [Escherichia coli strain B36 isolate B36]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment