Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   ABC967_RS07465 Genome accession   NZ_CP155059
Coordinates   1562305..1562991 (-) Length   228 a.a.
NCBI ID   WP_078370367.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC133-MSSA     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1557305..1567991
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC967_RS07445 (ABC967_07445) rpsT 1558219..1558470 (+) 252 WP_001274017.1 30S ribosomal protein S20 -
  ABC967_RS07450 (ABC967_07450) holA 1558515..1559489 (-) 975 WP_001282570.1 DNA polymerase III subunit delta -
  ABC967_RS07455 (ABC967_07455) comEC 1559546..1561747 (-) 2202 WP_217176340.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  ABC967_RS07460 (ABC967_07460) - 1561752..1562213 (-) 462 WP_000439693.1 ComE operon protein 2 -
  ABC967_RS07465 (ABC967_07465) comEA 1562305..1562991 (-) 687 WP_078370367.1 ComEA family DNA-binding protein Machinery gene
  ABC967_RS07470 (ABC967_07470) - 1563031..1563747 (-) 717 WP_000084829.1 class I SAM-dependent methyltransferase -
  ABC967_RS07475 (ABC967_07475) rsfS 1563750..1564103 (-) 354 WP_001088020.1 ribosome silencing factor -
  ABC967_RS07480 (ABC967_07480) yqeK 1564104..1564688 (-) 585 WP_001019324.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  ABC967_RS07485 (ABC967_07485) nadD 1564678..1565247 (-) 570 WP_000725163.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  ABC967_RS07490 (ABC967_07490) yhbY 1565250..1565540 (-) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  ABC967_RS07495 (ABC967_07495) aroE 1565544..1566350 (-) 807 WP_000666764.1 shikimate dehydrogenase -
  ABC967_RS07500 (ABC967_07500) yqeH 1566364..1567464 (-) 1101 WP_109183177.1 ribosome biogenesis GTPase YqeH -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25691.46 Da        Isoelectric Point: 9.5413

>NTDB_id=995929 ABC967_RS07465 WP_078370367.1 1562305..1562991(-) (comEA) [Staphylococcus aureus strain CC133-MSSA]
MVLLYQFLLRYKDFLTQCKLYIISAVVLIMVLIGFIFWRQDDYTTRNFENKDTALKQSTSEISSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQIGVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=995929 ABC967_RS07465 WP_078370367.1 1562305..1562991(-) (comEA) [Staphylococcus aureus strain CC133-MSSA]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGCAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTACAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAATTAGTAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGGAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTTGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969
  comEA Staphylococcus aureus N315

97.357

99.561

0.969

Multiple sequence alignment