Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   ABC967_RS04435 Genome accession   NZ_CP155059
Coordinates   932892..933878 (+) Length   328 a.a.
NCBI ID   WP_000959280.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC133-MSSA     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 927892..938878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC967_RS04410 (ABC967_04410) opp4B 928105..929067 (+) 963 WP_000593670.1 oligopeptide ABC transporter permease -
  ABC967_RS04415 (ABC967_04415) opp4C 929079..929960 (+) 882 WP_001180264.1 oligopeptide ABC transporter permease -
  ABC967_RS04420 (ABC967_04420) trpS 930002..930991 (-) 990 WP_000448934.1 tryptophan--tRNA ligase -
  ABC967_RS04425 (ABC967_04425) spxA 931286..931681 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  ABC967_RS04430 (ABC967_04430) mecA 932052..932771 (+) 720 WP_001217736.1 adaptor protein MecA -
  ABC967_RS04435 (ABC967_04435) coiA 932892..933878 (+) 987 WP_000959280.1 competence protein CoiA family protein Machinery gene
  ABC967_RS04440 (ABC967_04440) pepF 933926..935734 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  ABC967_RS04445 (ABC967_04445) yjbH 936194..937000 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  ABC967_RS04450 (ABC967_04450) - 937023..937388 (-) 366 WP_000214067.1 truncated hemoglobin YjbI -
  ABC967_RS04455 (ABC967_04455) - 937492..938085 (-) 594 WP_000224616.1 CYTH domain-containing protein -
  ABC967_RS04460 (ABC967_04460) - 938271..938618 (+) 348 WP_001242107.1 hypothetical protein -

Sequence


Protein


Download         Length: 328 a.a.        Molecular weight: 38720.32 Da        Isoelectric Point: 9.6486

>NTDB_id=995914 ABC967_RS04435 WP_000959280.1 932892..933878(+) (coiA) [Staphylococcus aureus strain CC133-MSSA]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNESIKHYKSKLILAQMMQQQGCKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPITRKL
HTFNLEKKQIMMFQQIQYIGGHKYVAEKGNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLH
LTDQEVVHNYGYIFPEQIYIENHPIEWQLQVDLWLKNGKSKLVSDNLNYFKLKKFIVALESKTAIIEKLINNYLKISSDR
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=995914 ABC967_RS04435 WP_000959280.1 932892..933878(+) (coiA) [Staphylococcus aureus strain CC133-MSSA]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGCGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAATCGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATGCAGCAACAAGGATGTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCAATCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATATAGGCGGGCACAAATATGTCGCTGA
AAAAGGGAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAATTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAGTTGCAT
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTGAAAATCATCCAATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAGTGACAATCTTAATTATTTTAAACTGAAAA
AGTTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAAAATTAGTTCAGATAGA
GGTAATGACGTGCAAATTTTGTTCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

96.341

100

0.963

  coiA Staphylococcus aureus N315

96.341

100

0.963


Multiple sequence alignment