Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   ABC967_RS02550 Genome accession   NZ_CP155059
Coordinates   541688..542257 (+) Length   189 a.a.
NCBI ID   WP_000872875.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CC133-MSSA     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 536688..547257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABC967_RS02525 (ABC967_02525) cysE 537868..538548 (+) 681 WP_001547606.1 serine O-acetyltransferase -
  ABC967_RS02530 (ABC967_02530) cysS 538532..539932 (+) 1401 WP_000631972.1 cysteine--tRNA ligase -
  ABC967_RS02535 (ABC967_02535) - 539925..540329 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  ABC967_RS02540 (ABC967_02540) rlmB 540337..541083 (+) 747 WP_000390334.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  ABC967_RS02545 (ABC967_02545) - 541083..541607 (+) 525 WP_000664738.1 NYN domain-containing protein -
  ABC967_RS02550 (ABC967_02550) sigH 541688..542257 (+) 570 WP_000872875.1 RNA polymerase sigma factor Regulator
  ABC967_RS02555 (ABC967_02555) rpmG 542372..542515 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  ABC967_RS02560 (ABC967_02560) secE 542571..542753 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  ABC967_RS02565 (ABC967_02565) nusG 542766..543314 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  ABC967_RS02570 (ABC967_02570) rplK 543495..543917 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  ABC967_RS02575 (ABC967_02575) rplA 544125..544817 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  ABC967_RS02580 (ABC967_02580) rplJ 545089..545589 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  ABC967_RS02585 (ABC967_02585) rplL 545632..546000 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  ABC967_RS02590 (ABC967_02590) - 546175..546783 (+) 609 WP_000020308.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23079.92 Da        Isoelectric Point: 9.6015

>NTDB_id=995909 ABC967_RS02550 WP_000872875.1 541688..542257(+) (sigH) [Staphylococcus aureus strain CC133-MSSA]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKII

Nucleotide


Download         Length: 570 bp        

>NTDB_id=995909 ABC967_RS02550 WP_000872875.1 541688..542257(+) (sigH) [Staphylococcus aureus strain CC133-MSSA]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATTCGACGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGGAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCTATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATAATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979

Multiple sequence alignment