Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AAHT64_RS04305 Genome accession   NZ_CP155054
Coordinates   854526..855170 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis strain R38     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 849526..860170
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAHT64_RS04275 (AAHT64_04275) - 849950..850318 (-) 369 WP_014477834.1 hypothetical protein -
  AAHT64_RS04280 (AAHT64_04280) - 850432..850557 (-) 126 WP_003228793.1 hypothetical protein -
  AAHT64_RS04285 (AAHT64_04285) degQ 850779..850919 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  AAHT64_RS04290 (AAHT64_04290) - 851104..851964 (+) 861 WP_029318489.1 polyprenyl synthetase family protein -
  AAHT64_RS04295 (AAHT64_04295) comX 851979..852140 (+) 162 WP_003228803.1 competence pheromone ComX -
  AAHT64_RS04300 (AAHT64_04300) comP 852148..854445 (+) 2298 WP_032730345.1 histidine kinase Regulator
  AAHT64_RS04305 (AAHT64_04305) comA 854526..855170 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  AAHT64_RS04310 (AAHT64_04310) yuxO 855189..855569 (+) 381 WP_003228810.1 hotdog fold thioesterase -
  AAHT64_RS04315 (AAHT64_04315) mnhG 855608..855982 (-) 375 WP_003228812.1 monovalent cation/H(+) antiporter subunit G -
  AAHT64_RS04320 (AAHT64_04320) mrpF 855966..856250 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  AAHT64_RS04325 (AAHT64_04325) mrpE 856250..856726 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  AAHT64_RS04330 (AAHT64_04330) mrpD 856732..858213 (-) 1482 WP_003228817.1 Na+/H+ antiporter subunit D -
  AAHT64_RS04335 (AAHT64_04335) mrpC 858206..858547 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  AAHT64_RS04340 (AAHT64_04340) mrpB 858547..858978 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=995827 AAHT64_RS04305 WP_003220716.1 854526..855170(+) (comA) [Bacillus subtilis subsp. subtilis strain R38]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=995827 AAHT64_RS04305 WP_003220716.1 854526..855170(+) (comA) [Bacillus subtilis subsp. subtilis strain R38]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment