Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AAVB50_RS21825 Genome accession   NZ_CP154923
Coordinates   4085815..4086765 (-) Length   316 a.a.
NCBI ID   WP_088325307.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2233     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4080815..4091765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS21805 (AAVB50_21800) ycnB 4081683..4083101 (+) 1419 WP_014478836.1 MDR family MFS transporter -
  AAVB50_RS21810 (AAVB50_21805) yclQ 4083148..4084101 (-) 954 WP_014478834.1 petrobactin ABC transporter substrate-binding protein YclQ -
  AAVB50_RS21815 (AAVB50_21810) yclP 4084123..4084881 (-) 759 WP_014475806.1 petrobactin ABC transporter ATP-binding protein YclP -
  AAVB50_RS21820 (AAVB50_21815) yclO 4084875..4085822 (-) 948 WP_003246705.1 petrobactin ABC transporter permease YclO -
  AAVB50_RS21825 (AAVB50_21820) ceuB 4085815..4086765 (-) 951 WP_088325307.1 petrobactin ABC transporter permease YclN Machinery gene
  AAVB50_RS21830 (AAVB50_21825) thrD 4087150..4088514 (+) 1365 WP_224912752.1 aspartate kinase -
  AAVB50_RS21835 (AAVB50_21830) yczN 4088667..4088780 (+) 114 WP_003234495.1 YjcZ family sporulation protein -
  AAVB50_RS21840 (AAVB50_21835) yczM 4088862..4088951 (+) 90 WP_015482794.1 YjcZ family sporulation protein -
  AAVB50_RS21845 (AAVB50_21840) phrC 4089051..4089173 (-) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  AAVB50_RS21850 (AAVB50_21845) rapC 4089157..4090305 (-) 1149 WP_015252823.1 response regulator aspartate phosphatase RapC Regulator

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34885.30 Da        Isoelectric Point: 9.9364

>NTDB_id=995569 AAVB50_RS21825 WP_088325307.1 4085815..4086765(-) (ceuB) [Bacillus subtilis strain FUA2233]
MKLRYLFILLIILAVTSVFIGVEDLSPLDLFDLSKQEASTLFASRLPRLISIIIAGLSMSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLIKMLVAFVFALAGNFLFMKILERIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTLAGMGESFSVNLGLKYKRVVNIGLIIVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKSSLPHTALLGAVFVLFCDILGRIIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=995569 AAVB50_RS21825 WP_088325307.1 4085815..4086765(-) (ceuB) [Bacillus subtilis strain FUA2233]
ATGAAGCTACGTTACTTATTTATTCTACTTATCATATTAGCAGTCACATCTGTATTTATCGGCGTAGAAGATCTGTCGCC
GCTTGATCTCTTCGATTTAAGCAAACAAGAGGCGTCAACGCTGTTTGCAAGCCGTTTGCCGCGATTGATCAGCATTATCA
TCGCGGGATTAAGCATGAGCATCTGCGGTTTGATTATGCAGCAGATCAGCAGAAATAAATTCGTGTCACCGACGACGGCG
GGCACGATGGATTGGGCGAGGCTCGGCATTTTAATTTCCTTGCTGCTGTTTACATCCGCCAGTCCTTTAATCAAAATGCT
GGTCGCGTTTGTCTTTGCCCTAGCAGGAAATTTTCTGTTTATGAAAATCCTTGAAAGAATCAAGTTTAACGACACCATCT
TTATTCCGCTTGTCGGTTTAATGCTCGGGAATATCGTCAGTTCAATCGCGACATTTATCGCATATAAATATGACTTGATC
CAGAATGTGTCATCATGGCTGCAGGGAGACTTCTCTTTAGTCGTGAAAGGAAGATACGAGCTTCTTTATCTGAGTATTCC
GCTCGTCATCATTGCCTATGTGTATGCGGATAAATTCACATTGGCCGGTATGGGTGAAAGCTTTTCTGTCAACCTCGGCC
TCAAGTACAAACGGGTTGTGAACATCGGGCTCATTATCGTGTCCCTGATCACGTCCCTTGTCATTTTGACTGTCGGTATG
CTGCCGTTTCTCGGTTTAATCATCCCGAATATTGTATCGATTTACAGAGGAGACAATCTGAAGAGCAGCCTGCCGCATAC
CGCGCTGTTGGGAGCGGTGTTTGTGCTGTTTTGCGATATACTGGGCAGAATCATTATCTTCCCTTATGAAATCTCGATTG
GCCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCCTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.532

100

0.525

Multiple sequence alignment