Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AAVB50_RS05950 Genome accession   NZ_CP154923
Coordinates   1127625..1128269 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2233     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1122625..1133269
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB50_RS05925 (AAVB50_05925) - 1122974..1123342 (-) 369 WP_017695529.1 hypothetical protein -
  AAVB50_RS05930 (AAVB50_05930) degQ 1123805..1123945 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  AAVB50_RS05935 (AAVB50_05935) - 1124130..1124993 (+) 864 WP_345805928.1 polyprenyl synthetase family protein -
  AAVB50_RS05940 (AAVB50_05940) comX 1124995..1125216 (+) 222 WP_014480704.1 competence pheromone ComX -
  AAVB50_RS05945 (AAVB50_05945) comP 1125232..1127544 (+) 2313 WP_213418792.1 histidine kinase Regulator
  AAVB50_RS05950 (AAVB50_05950) comA 1127625..1128269 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  AAVB50_RS05955 (AAVB50_05955) yuxO 1128288..1128668 (+) 381 WP_014477831.1 hotdog fold thioesterase -
  AAVB50_RS05960 (AAVB50_05960) mnhG 1128707..1129081 (-) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  AAVB50_RS05965 (AAVB50_05965) mrpF 1129065..1129349 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  AAVB50_RS05970 (AAVB50_05970) mrpE 1129349..1129825 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  AAVB50_RS05975 (AAVB50_05975) mrpD 1129831..1131312 (-) 1482 WP_041850587.1 Na+/H+ antiporter subunit D -
  AAVB50_RS05980 (AAVB50_05980) mrpC 1131305..1131646 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  AAVB50_RS05985 (AAVB50_05985) mrpB 1131646..1132077 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=995517 AAVB50_RS05950 WP_003220716.1 1127625..1128269(+) (comA) [Bacillus subtilis strain FUA2233]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=995517 AAVB50_RS05950 WP_003220716.1 1127625..1128269(+) (comA) [Bacillus subtilis strain FUA2233]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTCTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACGCCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment