Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AAVB74_RS15205 Genome accession   NZ_CP154920
Coordinates   2867179..2868072 (-) Length   297 a.a.
NCBI ID   WP_345806357.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2232     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2862179..2873072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB74_RS15190 (AAVB74_15190) xerC 2862551..2863465 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  AAVB74_RS15195 (AAVB74_15195) trmFO 2863533..2864840 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AAVB74_RS15200 (AAVB74_15200) topA 2864916..2866991 (-) 2076 WP_003245599.1 type I DNA topoisomerase -
  AAVB74_RS15205 (AAVB74_15205) dprA 2867179..2868072 (-) 894 WP_345806357.1 DNA-processing protein DprA Machinery gene
  AAVB74_RS15210 (AAVB74_15210) sucD 2868133..2869035 (-) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  AAVB74_RS15215 (AAVB74_15215) sucC 2869064..2870221 (-) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  AAVB74_RS15220 (AAVB74_15220) ylqH 2870394..2870675 (-) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  AAVB74_RS15225 (AAVB74_15225) - 2870672..2872402 (-) 1731 WP_345806358.1 hypothetical protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32972.28 Da        Isoelectric Point: 9.8776

>NTDB_id=995470 AAVB74_RS15205 WP_345806357.1 2867179..2868072(-) (dprA) [Bacillus subtilis strain FUA2232]
MDQAAACLTICRIYQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQFYPKLPRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTSYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=995470 AAVB74_RS15205 WP_345806357.1 2867179..2868072(-) (dprA) [Bacillus subtilis strain FUA2232]
TTGGATCAGGCTGCTGCCTGCCTAACGATTTGCAGAATCTATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCCGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAATTTTATCCAAAGCTCCCGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCTCCTGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACATCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTTGTTCAGGGCAAAGAAAAAAGCGGTTCACTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTGTTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.99

100

0.99
  dprA Legionella pneumophila strain ERS1305867

38.462

100

0.387
  dprA Lactococcus lactis subsp. cremoris KW2

41.697

91.246

0.38

Multiple sequence alignment