Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AAVB74_RS06180 Genome accession   NZ_CP154920
Coordinates   1192130..1192774 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2232     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1187130..1197774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB74_RS06155 (AAVB74_06155) - 1187479..1187847 (-) 369 WP_017695529.1 hypothetical protein -
  AAVB74_RS06160 (AAVB74_06160) degQ 1188310..1188450 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  AAVB74_RS06165 (AAVB74_06165) - 1188635..1189498 (+) 864 WP_345805928.1 polyprenyl synthetase family protein -
  AAVB74_RS06170 (AAVB74_06170) comX 1189500..1189721 (+) 222 WP_014480704.1 competence pheromone ComX -
  AAVB74_RS06175 (AAVB74_06175) comP 1189737..1192049 (+) 2313 WP_213418792.1 histidine kinase Regulator
  AAVB74_RS06180 (AAVB74_06180) comA 1192130..1192774 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  AAVB74_RS06185 (AAVB74_06185) yuxO 1192793..1193173 (+) 381 WP_014477831.1 hotdog fold thioesterase -
  AAVB74_RS06190 (AAVB74_06190) mnhG 1193212..1193586 (-) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  AAVB74_RS06195 (AAVB74_06195) mrpF 1193570..1193854 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  AAVB74_RS06200 (AAVB74_06200) mrpE 1193854..1194330 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  AAVB74_RS06205 (AAVB74_06205) mrpD 1194336..1195817 (-) 1482 WP_041850587.1 Na+/H+ antiporter subunit D -
  AAVB74_RS06210 (AAVB74_06210) mrpC 1195810..1196151 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  AAVB74_RS06215 (AAVB74_06215) mrpB 1196151..1196582 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=995440 AAVB74_RS06180 WP_003220716.1 1192130..1192774(+) (comA) [Bacillus subtilis strain FUA2232]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=995440 AAVB74_RS06180 WP_003220716.1 1192130..1192774(+) (comA) [Bacillus subtilis strain FUA2232]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTCTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACGCCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment