Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   AAYR29_RS20910 Genome accession   NZ_CP154918
Coordinates   3915241..3916632 (+) Length   463 a.a.
NCBI ID   WP_345805835.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2231     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3910241..3921632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR29_RS20890 (AAYR29_20890) yvyE 3911393..3912046 (-) 654 WP_003227979.1 YigZ family protein -
  AAYR29_RS20895 (AAYR29_20895) degS 3912263..3913420 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  AAYR29_RS20900 (AAYR29_20900) degU 3913503..3914192 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AAYR29_RS20905 (AAYR29_20905) fakBA 3914290..3915135 (+) 846 WP_003244125.1 DegV family protein -
  AAYR29_RS20910 (AAYR29_20910) comFA 3915241..3916632 (+) 1392 WP_345805835.1 ATP-dependent helicase ComFA Machinery gene
  AAYR29_RS20915 (AAYR29_20915) comFB 3916692..3916988 (+) 297 WP_015483764.1 late competence protein ComFB -
  AAYR29_RS20920 (AAYR29_20920) comFC 3916952..3917674 (+) 723 WP_345805836.1 comF operon protein ComFC Machinery gene
  AAYR29_RS20925 (AAYR29_20925) yvyF 3917748..3918167 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  AAYR29_RS20930 (AAYR29_20930) flgM 3918248..3918514 (+) 267 WP_128738293.1 flagellar biosynthesis anti-sigma factor FlgM -
  AAYR29_RS20935 (AAYR29_20935) flgN 3918530..3919012 (+) 483 WP_003227999.1 flagellar protein FlgN -
  AAYR29_RS20940 (AAYR29_20940) flgK 3919031..3920554 (+) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  AAYR29_RS20945 (AAYR29_20945) flgL 3920565..3921461 (+) 897 WP_015714797.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52607.61 Da        Isoelectric Point: 9.8808

>NTDB_id=995413 AAYR29_RS20910 WP_345805835.1 3915241..3916632(+) (comFA) [Bacillus subtilis strain FUA2231]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSNGQQKAANVLIEAISKKEELLIWAVCGAGKTEILFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESPIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=995413 AAYR29_RS20910 WP_345805835.1 3915241..3916632(+) (comFA) [Bacillus subtilis strain FUA2231]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCCTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAACGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGAAAAACAGAAATTCTGTTTCCAGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCGCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCATTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCACCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.272

100

0.983

Multiple sequence alignment