Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   AAYR29_RS20900 Genome accession   NZ_CP154918
Coordinates   3913503..3914192 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain FUA2231     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3908503..3919192
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR29_RS20880 (AAYR29_20880) tagO 3909069..3910145 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  AAYR29_RS20885 (AAYR29_20885) tagV 3910218..3911393 (-) 1176 WP_345805834.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  AAYR29_RS20890 (AAYR29_20890) yvyE 3911393..3912046 (-) 654 WP_003227979.1 YigZ family protein -
  AAYR29_RS20895 (AAYR29_20895) degS 3912263..3913420 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  AAYR29_RS20900 (AAYR29_20900) degU 3913503..3914192 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AAYR29_RS20905 (AAYR29_20905) fakBA 3914290..3915135 (+) 846 WP_003244125.1 DegV family protein -
  AAYR29_RS20910 (AAYR29_20910) comFA 3915241..3916632 (+) 1392 WP_345805835.1 ATP-dependent helicase ComFA Machinery gene
  AAYR29_RS20915 (AAYR29_20915) comFB 3916692..3916988 (+) 297 WP_015483764.1 late competence protein ComFB -
  AAYR29_RS20920 (AAYR29_20920) comFC 3916952..3917674 (+) 723 WP_345805836.1 comF operon protein ComFC Machinery gene
  AAYR29_RS20925 (AAYR29_20925) yvyF 3917748..3918167 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  AAYR29_RS20930 (AAYR29_20930) flgM 3918248..3918514 (+) 267 WP_128738293.1 flagellar biosynthesis anti-sigma factor FlgM -
  AAYR29_RS20935 (AAYR29_20935) flgN 3918530..3919012 (+) 483 WP_003227999.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=995412 AAYR29_RS20900 WP_003219701.1 3913503..3914192(+) (degU) [Bacillus subtilis strain FUA2231]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=995412 AAYR29_RS20900 WP_003219701.1 3913503..3914192(+) (degU) [Bacillus subtilis strain FUA2231]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment