Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   AAYR29_RS15525 Genome accession   NZ_CP154918
Coordinates   2901211..2901609 (+) Length   132 a.a.
NCBI ID   WP_015252845.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2231     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2896211..2906609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR29_RS15495 (AAYR29_15495) - 2896423..2896680 (+) 258 WP_345806536.1 hypothetical protein -
  AAYR29_RS15500 (AAYR29_15500) hxlR 2896946..2897308 (-) 363 WP_003246265.1 transcriptional activator HxlR -
  AAYR29_RS15505 (AAYR29_15505) hxlA 2897540..2898172 (+) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  AAYR29_RS15510 (AAYR29_15510) hxlB 2898178..2898735 (+) 558 WP_038428343.1 6-phospho-3-hexuloisomerase -
  AAYR29_RS15515 (AAYR29_15515) tlpC 2898846..2900567 (+) 1722 WP_192858189.1 methyl-accepting chemotaxis protein TlpC -
  AAYR29_RS15520 (AAYR29_15520) nucA/comI 2900735..2901184 (+) 450 WP_033883649.1 DNA-entry nuclease Machinery gene
  AAYR29_RS15525 (AAYR29_15525) nin/comJ 2901211..2901609 (+) 399 WP_015252845.1 DNA-entry nuclease inhibitor Regulator
  AAYR29_RS15530 (AAYR29_15530) bglC 2901646..2903079 (-) 1434 WP_345805643.1 6-phospho-beta-glucosidase -
  AAYR29_RS15535 (AAYR29_15535) yckD 2903232..2903564 (-) 333 WP_015252849.1 YckD family protein -
  AAYR29_RS15540 (AAYR29_15540) yckC 2903646..2904102 (-) 457 Protein_3009 RDD family protein -
  AAYR29_RS15545 (AAYR29_15545) - 2904121..2904318 (-) 198 WP_119122841.1 hypothetical protein -
  AAYR29_RS15550 (AAYR29_15550) yckB 2904480..2905343 (+) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  AAYR29_RS15555 (AAYR29_15555) yckA 2905353..2906033 (+) 681 WP_003234624.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14935.86 Da        Isoelectric Point: 4.7078

>NTDB_id=995397 AAYR29_RS15525 WP_015252845.1 2901211..2901609(+) (nin/comJ) [Bacillus subtilis strain FUA2231]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVNSYETKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=995397 AAYR29_RS15525 WP_015252845.1 2901211..2901609(+) (nin/comJ) [Bacillus subtilis strain FUA2231]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAACAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

98.485

100

0.985

Multiple sequence alignment