Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AAYR29_RS15520 Genome accession   NZ_CP154918
Coordinates   2900735..2901184 (+) Length   149 a.a.
NCBI ID   WP_033883649.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2231     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2895735..2906184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR29_RS15495 (AAYR29_15495) - 2896423..2896680 (+) 258 WP_345806536.1 hypothetical protein -
  AAYR29_RS15500 (AAYR29_15500) hxlR 2896946..2897308 (-) 363 WP_003246265.1 transcriptional activator HxlR -
  AAYR29_RS15505 (AAYR29_15505) hxlA 2897540..2898172 (+) 633 WP_003246452.1 3-hexulose-6-phosphate synthase -
  AAYR29_RS15510 (AAYR29_15510) hxlB 2898178..2898735 (+) 558 WP_038428343.1 6-phospho-3-hexuloisomerase -
  AAYR29_RS15515 (AAYR29_15515) tlpC 2898846..2900567 (+) 1722 WP_192858189.1 methyl-accepting chemotaxis protein TlpC -
  AAYR29_RS15520 (AAYR29_15520) nucA/comI 2900735..2901184 (+) 450 WP_033883649.1 DNA-entry nuclease Machinery gene
  AAYR29_RS15525 (AAYR29_15525) nin/comJ 2901211..2901609 (+) 399 WP_015252845.1 DNA-entry nuclease inhibitor Regulator
  AAYR29_RS15530 (AAYR29_15530) bglC 2901646..2903079 (-) 1434 WP_345805643.1 6-phospho-beta-glucosidase -
  AAYR29_RS15535 (AAYR29_15535) yckD 2903232..2903564 (-) 333 WP_015252849.1 YckD family protein -
  AAYR29_RS15540 (AAYR29_15540) yckC 2903646..2904102 (-) 457 Protein_3009 RDD family protein -
  AAYR29_RS15545 (AAYR29_15545) - 2904121..2904318 (-) 198 WP_119122841.1 hypothetical protein -
  AAYR29_RS15550 (AAYR29_15550) yckB 2904480..2905343 (+) 864 WP_009966510.1 transporter substrate-binding domain-containing protein -
  AAYR29_RS15555 (AAYR29_15555) yckA 2905353..2906033 (+) 681 WP_003234624.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16454.42 Da        Isoelectric Point: 4.5282

>NTDB_id=995396 AAYR29_RS15520 WP_033883649.1 2900735..2901184(+) (nucA/comI) [Bacillus subtilis strain FUA2231]
MNITTDIIKTILLVIVIIAAAAIGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=995396 AAYR29_RS15520 WP_033883649.1 2900735..2901184(+) (nucA/comI) [Bacillus subtilis strain FUA2231]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTATCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCTTCTGACCGTT
ATCCCGAAACGGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98

Multiple sequence alignment