Detailed information NTG0995392

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EJM92_RS24505
• Genome accession: NZ_LR130531
• Coordinates: 5194326..5195330 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa isolate paerg004
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5189326..5200330

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EJM92_RS24475 (BANRA_04755)	fghA	5189418..5190269 (+)	852	WP_004345459.1	S-formylglutathione hydrolase	-
EJM92_RS24480 (BANRA_04756)	ispF	5190340..5190813 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EJM92_RS24485 (BANRA_04757)	truD	5190810..5191877 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
EJM92_RS24490 (BANRA_04758)	surE	5191865..5192614 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
EJM92_RS24495 (BANRA_04759)	-	5192647..5193282 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EJM92_RS24500 (BANRA_04760)	-	5193328..5194221 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
EJM92_RS24505 (BANRA_04761)	rpoS	5194326..5195330 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
EJM92_RS24510 (BANRA_04762)	fdxA	5195756..5196079 (-)	324	WP_003092272.1	ferredoxin FdxA	-
EJM92_RS24515 (BANRA_04763)	mutS	5196146..5198713 (-)	2568	WP_125075372.1	DNA mismatch repair protein MutS	-
EJM92_RS24525 (BANRA_04764)	-	5198839..5199846 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=995392 EJM92_RS24505 WP_003113871.1 5194326..5195330(+) (rpoS) [Pseudomonas aeruginosa isolate paerg004]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=995392 EJM92_RS24505 WP_003113871.1 5194326..5195330(+) (rpoS) [Pseudomonas aeruginosa isolate paerg004]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653