Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AAYR29_RS08455 Genome accession   NZ_CP154918
Coordinates   1556890..1557783 (-) Length   297 a.a.
NCBI ID   WP_345806357.1    Uniprot ID   -
Organism   Bacillus subtilis strain FUA2231     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1551890..1562783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR29_RS08440 (AAYR29_08440) xerC 1552262..1553176 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  AAYR29_RS08445 (AAYR29_08445) trmFO 1553244..1554551 (-) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AAYR29_RS08450 (AAYR29_08450) topA 1554627..1556702 (-) 2076 WP_003245599.1 type I DNA topoisomerase -
  AAYR29_RS08455 (AAYR29_08455) dprA 1556890..1557783 (-) 894 WP_345806357.1 DNA-processing protein DprA Machinery gene
  AAYR29_RS08460 (AAYR29_08460) sucD 1557844..1558746 (-) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  AAYR29_RS08465 (AAYR29_08465) sucC 1558775..1559932 (-) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  AAYR29_RS08470 (AAYR29_08470) ylqH 1560105..1560386 (-) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  AAYR29_RS08475 (AAYR29_08475) - 1560383..1562113 (-) 1731 WP_345806358.1 hypothetical protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32972.28 Da        Isoelectric Point: 9.8776

>NTDB_id=995370 AAYR29_RS08455 WP_345806357.1 1556890..1557783(-) (dprA) [Bacillus subtilis strain FUA2231]
MDQAAACLTICRIYQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQFYPKLPRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTSYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=995370 AAYR29_RS08455 WP_345806357.1 1556890..1557783(-) (dprA) [Bacillus subtilis strain FUA2231]
TTGGATCAGGCTGCTGCCTGCCTAACGATTTGCAGAATCTATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCCGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAATTTTATCCAAAGCTCCCGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCTCCTGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACATCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTTGTTCAGGGCAAAGAAAAAAGCGGTTCACTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTGTTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.99

100

0.99
  dprA Legionella pneumophila strain ERS1305867

38.462

100

0.387
  dprA Lactococcus lactis subsp. cremoris KW2

41.697

91.246

0.38

Multiple sequence alignment