Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AAVC46_RS06610 Genome accession   NZ_CP154913
Coordinates   1274658..1276391 (-) Length   577 a.a.
NCBI ID   WP_340973280.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2119     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1269658..1281391
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC46_RS06595 (AAVC46_06595) - 1270541..1271641 (-) 1101 WP_066030680.1 Rap family tetratricopeptide repeat protein -
  AAVC46_RS06600 (AAVC46_06600) spo0A 1272093..1272896 (-) 804 WP_012010520.1 sporulation transcription factor Spo0A Regulator
  AAVC46_RS06605 (AAVC46_06605) spoIVB 1273182..1274459 (-) 1278 WP_340973278.1 SpoIVB peptidase -
  AAVC46_RS06610 (AAVC46_06610) recN 1274658..1276391 (-) 1734 WP_340973280.1 DNA repair protein RecN Machinery gene
  AAVC46_RS06615 (AAVC46_06615) argR 1276425..1276874 (-) 450 WP_034661246.1 transcriptional regulator ArgR -
  AAVC46_RS06620 (AAVC46_06620) - 1277037..1277891 (-) 855 WP_340973282.1 TlyA family RNA methyltransferase -
  AAVC46_RS06625 (AAVC46_06625) dxs 1277888..1279789 (-) 1902 WP_334749698.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AAVC46_RS06630 (AAVC46_06630) - 1279940..1280830 (-) 891 WP_034661251.1 polyprenyl synthetase family protein -
  AAVC46_RS06635 (AAVC46_06635) - 1280820..1281080 (-) 261 WP_345821631.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64651.36 Da        Isoelectric Point: 4.7442

>NTDB_id=995305 AAVC46_RS06610 WP_340973280.1 1274658..1276391(-) (recN) [Bacillus pumilus strain FUA2119]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNNGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALS
QYQEAYEQYTKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIFSSLQNAYNALRNE
QGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSVLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWATKLAKQIQTELKDLYMEKSSFDTAFSI
RYAPFGSTDYPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDTG
VSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=995305 AAVC46_RS06610 WP_340973280.1 1274658..1276391(-) (recN) [Bacillus pumilus strain FUA2119]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCGTTTGAAAAAGGACTCACAGTCCT
AACAGGGGAAACAGGTGCTGGAAAATCCATCATGATTGACGCAGTCTCACTTCTTGTAGGAGGGAGAGGGTCGTCTGAAT
TTGTTCGTTATGGTGAAAAAAAGGCAGAGCTGGAGGGGCTTTTTCTTGTGCCAGCCGATCACCCTGTATTTGCTTTATGC
GAAGAGCAGGGAATTGACGCATCGGATGAAATGATGATTCTTCGCCGTGATATTAACAATAACGGAAAAAGCATCTGCCG
CATCAATGGCAAACTTGTCACGATCTCACTTTTACGCGAAGTAGGACGCCTTTTGCTCGATATACATGGGCAGCACGATA
ACCAGTTATTGATGGAGGATGAAAATCATCTGCATTTGCTCGATCAATTTGGAGCAGAAGAAATTGCACCTGCTTTGTCA
CAATATCAAGAAGCATATGAGCAATATACAAAGACAGCCCAAAAGCTAAAACAGCTCTCTGAGAATGAGCAAGAGATGGT
GCACCGGTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAAGCGGCACAATTAGAGCCGGGAGAAGATGAGAAGCTTC
AAGAAGAGCGCCATCAGATCAGCAACTACGAAAAAATCTTTTCCTCACTCCAAAACGCATATAATGCCTTGCGCAATGAG
CAGGGAGGACTTGATTGGGTTGGCATGTCATCAAGCGAGCTCGAGCAGGTTTCTGAGATCAACGACGATCTGAAAAAGCT
ATCCGAACAAGTGTCGAACTCCTATTACTTATTAGAGGATTCGACGTTCCAAATGCGAAGCGTGTTGGATCAATTAGAGT
TCGACCCAGCACGTCTTGATTTTATTGAATCTAGGCTGAATGAAATGAAGCAGTTAAAACGAAAATATGGGACAACGGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATAGAAGAAGAAATAGATCAAATTCAAAATCGAGACAGCCACCTGCAGACGCT
TAAAAACAAACTGGATGCAATGAGCCGTGATGCCCTGCTGGAAGCTCTCAACGTTTCGGAGCTTCGTAAAAAATGGGCCA
CAAAGCTAGCGAAGCAAATTCAAACGGAACTAAAGGATTTGTATATGGAGAAGTCATCGTTTGACACAGCTTTTTCCATT
CGGTATGCGCCTTTTGGCAGTACGGACTATCCGCTGCTAGATGGAAAGCCCGTCCAGCTCGGAAAAAACGGAATCGACCA
AGCACAATTTGTTATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCAAAAGTAGCCTCGGGTGGAGAAATTTCAC
GTGTCATGCTCGCCGTGAAAAGTATTTTCTCAGCCAAACAAGAAGTCACGTCCATTATTTTCGATGAGGTGGATACGGGC
GTAAGCGGCAGAGTTGCACAGGCGATTGCCGAAAAAATTTACAAAGTAGCAGCTGGCTCACAAGTGCTCTGCATTACGCA
CCTCCCGCAAGTAGCAGCAATGGCTGACACGCATCTCTTCATTTCTAAACGCTCTAAAGCCGGCAGAACACTGACGAGCG
TCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCAGGATGATTGCGGGGGTGGAAGTCACTGAGCTGACAAAA
CAGCACGCAAAAGAATTGCTGCATCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.043

100

0.75

Multiple sequence alignment