Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   AAVC46_RS06600 Genome accession   NZ_CP154913
Coordinates   1272093..1272896 (-) Length   267 a.a.
NCBI ID   WP_012010520.1    Uniprot ID   W6IDW7
Organism   Bacillus pumilus strain FUA2119     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1267093..1277896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC46_RS06585 (AAVC46_06585) - 1269306..1269542 (+) 237 WP_307499895.1 DUF2627 domain-containing protein -
  AAVC46_RS06590 (AAVC46_06590) - 1269577..1270314 (-) 738 WP_307499896.1 glycerophosphodiester phosphodiesterase -
  AAVC46_RS06595 (AAVC46_06595) - 1270541..1271641 (-) 1101 WP_066030680.1 Rap family tetratricopeptide repeat protein -
  AAVC46_RS06600 (AAVC46_06600) spo0A 1272093..1272896 (-) 804 WP_012010520.1 sporulation transcription factor Spo0A Regulator
  AAVC46_RS06605 (AAVC46_06605) spoIVB 1273182..1274459 (-) 1278 WP_340973278.1 SpoIVB peptidase -
  AAVC46_RS06610 (AAVC46_06610) recN 1274658..1276391 (-) 1734 WP_340973280.1 DNA repair protein RecN Machinery gene
  AAVC46_RS06615 (AAVC46_06615) argR 1276425..1276874 (-) 450 WP_034661246.1 transcriptional regulator ArgR -
  AAVC46_RS06620 (AAVC46_06620) - 1277037..1277891 (-) 855 WP_340973282.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29918.44 Da        Isoelectric Point: 6.3913

>NTDB_id=995304 AAVC46_RS06600 WP_012010520.1 1272093..1272896(-) (spo0A) [Bacillus pumilus strain FUA2119]
MEKIKVCVADDNRELVGLLTEYIEGQEDMEVLGVAYNGQECLTLFKDKEPDVLLLDIIMPHLDGLAVLERLRENNDMTKQ
PSVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGTQVTHRSSSIQNSVLRNKPEPKRKNLDASITTI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMSKAKPTNSEFIAMVADRLRLEHRAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=995304 AAVC46_RS06600 WP_012010520.1 1272093..1272896(-) (spo0A) [Bacillus pumilus strain FUA2119]
GTGGAGAAAATTAAAGTGTGTGTAGCTGATGACAATCGAGAGCTTGTTGGCCTTTTGACAGAGTATATTGAGGGACAGGA
AGATATGGAAGTACTTGGCGTGGCGTATAATGGCCAGGAATGTCTGACATTATTTAAAGATAAAGAGCCCGACGTTCTCC
TCTTAGATATTATCATGCCTCATTTAGACGGTCTTGCTGTACTGGAACGCCTCCGTGAAAACAATGACATGACCAAACAG
CCAAGTGTGATTATGCTAACGGCGTTCGGTCAAGAAGATGTCACGAAAAAAGCAGTTGATTTGGGCGCATCCTATTTCAT
CTTAAAGCCATTTGATATGGAAAACCTAGTCGGTCATATTCGTCAAGTCAGTGGAAACGGCACACAAGTCACCCATCGAT
CTTCATCTATCCAAAACAGTGTCCTTCGGAACAAACCTGAACCGAAACGTAAAAACTTAGATGCGAGCATTACGACGATT
ATTCATGAGATTGGCGTACCCGCTCATATTAAAGGATATTTATACTTAAGAGAAGCGATTTCGATGGTGTACAATGACAT
TGAGCTTCTCGGAAGCATCACAAAAGTGTTGTACCCAGACATCGCGAAGAAATTTAACACGACTGCCAGCAGGGTAGAAC
GAGCGATTCGCCATGCGATTGAAGTTGCTTGGAGCAGAGGAAACATCGATTCCATTTCTTCACTCTTTGGTTATACAGTC
AGCATGTCTAAAGCGAAACCAACCAATTCTGAATTTATTGCTATGGTGGCTGATCGTCTGCGCTTAGAGCATAGAGCTAG
CTAG

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W6IDW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

88.433

100

0.888

Multiple sequence alignment