Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AAYR27_RS15610 Genome accession   NZ_CP154912
Coordinates   3042345..3043247 (-) Length   300 a.a.
NCBI ID   WP_061109838.1    Uniprot ID   -
Organism   Bacillus safensis strain FUA2118     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3037345..3048247
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR27_RS15595 (AAYR27_15595) xerC 3037721..3038638 (-) 918 WP_034281771.1 tyrosine recombinase XerC -
  AAYR27_RS15600 (AAYR27_15600) trmFO 3038701..3040005 (-) 1305 WP_024424183.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AAYR27_RS15605 (AAYR27_15605) topA 3040076..3042151 (-) 2076 WP_041108973.1 type I DNA topoisomerase -
  AAYR27_RS15610 (AAYR27_15610) dprA 3042345..3043247 (-) 903 WP_061109838.1 DNA-processing protein DprA Machinery gene
  AAYR27_RS15615 (AAYR27_15615) sucD 3043311..3044213 (-) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  AAYR27_RS15620 (AAYR27_15620) sucC 3044236..3045396 (-) 1161 WP_024426972.1 ADP-forming succinate--CoA ligase subunit beta -
  AAYR27_RS15625 (AAYR27_15625) - 3045573..3045848 (-) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  AAYR27_RS15630 (AAYR27_15630) - 3045845..3047584 (-) 1740 WP_251232136.1 glycosyltransferase -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34121.52 Da        Isoelectric Point: 8.8758

>NTDB_id=995261 AAYR27_RS15610 WP_061109838.1 3042345..3043247(-) (dprA) [Bacillus safensis strain FUA2118]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRALQTIDLTRLKQAEENEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKNIYDPPPVLFLKGNVSYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGIIAGGFQHLYPKEHEQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTKGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTEPT

Nucleotide


Download         Length: 903 bp        

>NTDB_id=995261 AAYR27_RS15610 WP_061109838.1 3042345..3043247(-) (dprA) [Bacillus safensis strain FUA2118]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCATTATTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTTAAACAGGATCGAGCATTACAAACGATCGACCTTACCC
GCTTAAAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAAAATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTCGGCACGCGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTAAAGGAAGATTGGATGATTGTCAGTGGTTTAGCTAAAGGAATCGATGGACTTGCACAT
AAAGAGTGCATCAGAAAAAAAGGAAAAACGATCGGCATTATAGCAGGCGGTTTTCAACATTTATACCCAAAAGAGCATGA
GCAAATGGCTCAATACATGGGCGAGCATCATTTGCTTTTGTCAGAGCATCCTCCTTATGTCAAACCAGAAAAGTGGCATT
TTCCAATGAGAAATCGTTTAATTAGTGCACTGACGAAAGGAACCATCGTGATACAGTGCAAAGAAAAGAGCGGTTCTCTT
ATTACAGCCTATCAAGCACTTGAGCAAGGAAAAGAGGTATTTGCGGTTGCTGGATCCATCTTTGATCCTAATTCCACAGG
TCCGGCAAGACTCATTCAGCAGGGAGCAAAGCTTGTTCATTCAACAAAAGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACCAACATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.208

96

0.53
  dprA Legionella pneumophila strain ERS1305867

38.361

100

0.39
  dprA Lactococcus lactis subsp. cremoris KW2

38.754

96.333

0.373

Multiple sequence alignment