Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AAYR27_RS08430 Genome accession   NZ_CP154912
Coordinates   1681247..1681888 (+) Length   213 a.a.
NCBI ID   WP_101676435.1    Uniprot ID   -
Organism   Bacillus safensis strain FUA2118     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1676247..1686888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR27_RS08405 (AAYR27_08405) - 1676633..1676989 (-) 357 WP_101676437.1 inner spore coat protein -
  AAYR27_RS08410 (AAYR27_08410) degQ 1677495..1677635 (+) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  AAYR27_RS08415 (AAYR27_08415) - 1677787..1678710 (+) 924 WP_065215228.1 polyprenyl synthetase family protein -
  AAYR27_RS08420 (AAYR27_08420) comX 1678688..1678861 (+) 174 WP_046313343.1 competence pheromone ComX -
  AAYR27_RS08425 (AAYR27_08425) comP 1678875..1681166 (+) 2292 WP_345831979.1 ATP-binding protein Regulator
  AAYR27_RS08430 (AAYR27_08430) comA 1681247..1681888 (+) 642 WP_101676435.1 response regulator transcription factor Regulator
  AAYR27_RS08435 (AAYR27_08435) - 1681912..1682301 (+) 390 WP_024423321.1 hotdog fold thioesterase -
  AAYR27_RS08440 (AAYR27_08440) mnhG 1682392..1682766 (-) 375 WP_024423320.1 monovalent cation/H(+) antiporter subunit G -
  AAYR27_RS08445 (AAYR27_08445) - 1682750..1683031 (-) 282 WP_024425942.1 Na(+)/H(+) antiporter subunit F1 -
  AAYR27_RS08450 (AAYR27_08450) - 1683031..1683510 (-) 480 WP_024425941.1 Na+/H+ antiporter subunit E -
  AAYR27_RS08455 (AAYR27_08455) - 1683517..1684995 (-) 1479 WP_024425940.1 Na+/H+ antiporter subunit D -
  AAYR27_RS08460 (AAYR27_08460) - 1684988..1685329 (-) 342 WP_024423316.1 Na(+)/H(+) antiporter subunit C -
  AAYR27_RS08465 (AAYR27_08465) - 1685329..1685760 (-) 432 WP_101676434.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24089.50 Da        Isoelectric Point: 4.6344

>NTDB_id=995241 AAYR27_RS08430 WP_101676435.1 1681247..1681888(+) (comA) [Bacillus safensis strain FUA2118]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNHQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIECIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHDLLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=995241 AAYR27_RS08430 WP_101676435.1 1681247..1681888(+) (comA) [Bacillus safensis strain FUA2118]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGACCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTAA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTTTAGAAACCAACCATCAAGTGAAAATTATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCTATTCGGGCTGGATTACACGGTGCAATTAGCAAAACAGA
GACGAAAGACAAAATTATTGAATGCATACACCGGACATTGCAAGGGGAAGTTGTCATTCAGCTGTCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACTGATCACGATCTCTTAACCGAACGGGAGTGTTTGATC
CTTAGAGAAGTGGAAAAAGGATACACGAACCAGGAGATTGCCGATGTGCTTCATTTGAGCAAACGGTCAATTGAGTACAG
TTTGACATCCATCTTTAATAAGCTGAATGTTGGATCTCGTACAGAAGCGGTGTTAATTGCCAAGTCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718

Multiple sequence alignment