Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   EJN10_RS15695 Genome accession   NZ_LR130528
Coordinates   3260758..3261399 (+) Length   213 a.a.
NCBI ID   WP_124034501.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa isolate paerg000     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3255758..3266399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJN10_RS15675 (BANRA_03056) parS 3257128..3258414 (-) 1287 WP_003087912.1 sensor histidine kinase ParS -
  EJN10_RS15680 (BANRA_03057) parR 3258415..3259122 (-) 708 WP_003098126.1 response regulator transcription factor ParR -
  EJN10_RS15690 (BANRA_03058) tig 3259354..3260664 (+) 1311 WP_061188501.1 trigger factor -
  EJN10_RS15695 (BANRA_03059) clpP 3260758..3261399 (+) 642 WP_124034501.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  EJN10_RS15700 (BANRA_03060) clpX 3261504..3262784 (+) 1281 WP_003087924.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  EJN10_RS15705 (BANRA_03061) lon 3262916..3265312 (+) 2397 WP_003087926.1 endopeptidase La -
  EJN10_RS15710 (BANRA_03062) hupB 3265448..3265720 (+) 273 WP_003087931.1 nucleoid-associated protein HU-beta -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23472.11 Da        Isoelectric Point: 6.3772

>NTDB_id=995169 EJN10_RS15695 WP_124034501.1 3260758..3261399(+) (clpP) [Pseudomonas aeruginosa isolate paerg000]
MSRNSFIPHVPDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERIIFLVGQVEDYMANLVVAQLLFLEAENPEKDIHLYI
NSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGALLLAGGAAGKRYCLPHSRMMIHQPLGGFQGQASDIEIHAKEIL
FIKERLNQILAHHTGQPLDVIARDTDRDRFMSGDEAVKYGLIDKVMAQRDLAV

Nucleotide


Download         Length: 642 bp        

>NTDB_id=995169 EJN10_RS15695 WP_124034501.1 3260758..3261399(+) (clpP) [Pseudomonas aeruginosa isolate paerg000]
ATGTCTCGCAACTCTTTTATTCCGCACGTTCCCGATATCCAGGCCGCCGGTGGCCTGGTGCCCATGGTGGTGGAGCAGTC
CGCCCGCGGCGAGCGAGCCTACGACATCTATTCGCGCCTGCTGAAGGAGCGGATCATCTTCCTGGTCGGCCAGGTCGAGG
ACTACATGGCCAACCTGGTGGTTGCCCAGTTGCTGTTCCTGGAGGCTGAAAATCCCGAGAAGGACATTCATCTCTACATC
AACTCGCCGGGTGGCTCGGTGACTGCCGGGATGTCCATCTACGACACCATGCAGTTCATCAAGCCCAACGTCTCGACCAC
CTGTATCGGCCAGGCGTGCAGCATGGGTGCCCTGCTGCTTGCGGGCGGTGCCGCCGGCAAGCGTTACTGCCTGCCGCATT
CGCGGATGATGATCCACCAGCCGCTGGGCGGTTTCCAGGGCCAGGCCTCGGATATCGAGATCCATGCCAAGGAAATCCTC
TTCATCAAGGAGCGTCTGAACCAGATCCTGGCGCACCACACCGGCCAGCCCCTGGACGTCATTGCCCGCGATACCGATCG
TGACCGCTTCATGAGCGGTGACGAAGCCGTCAAGTATGGCCTGATCGACAAGGTCATGGCCCAGCGCGACCTGGCCGTCT
AA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(29-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.188

90.141

0.606
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.789

89.202

0.587
  clpP Lactococcus lactis subsp. cremoris KW2

53.299

92.488

0.493
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.777

92.488

0.479
  clpP Streptococcus pneumoniae TIGR4

51.282

91.549

0.469
  clpP Streptococcus pneumoniae Rx1

51.282

91.549

0.469
  clpP Streptococcus pneumoniae D39

51.282

91.549

0.469
  clpP Streptococcus pneumoniae R6

51.282

91.549

0.469
  clpP Streptococcus mutans UA159

50.51

92.019

0.465
  clpP Streptococcus pyogenes JRS4

50.769

91.549

0.465
  clpP Streptococcus pyogenes MGAS315

50.769

91.549

0.465
  clpP Streptococcus thermophilus LMD-9

50.256

91.549

0.46
  clpP Streptococcus thermophilus LMG 18311

50.256

91.549

0.46

Multiple sequence alignment