Detailed information    

insolico Bioinformatically predicted

Overview


Name   ceuB   Type   Machinery gene
Locus tag   AAYR28_RS05035 Genome accession   NZ_CP154909
Coordinates   1000026..1000976 (+) Length   316 a.a.
NCBI ID   WP_120207356.1    Uniprot ID   -
Organism   Bacillus safensis strain FUA2117     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 995026..1005976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR28_RS05010 (AAYR28_05010) - 996501..997361 (+) 861 WP_034282185.1 SDR family oxidoreductase -
  AAYR28_RS05015 (AAYR28_05015) - 997418..997654 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  AAYR28_RS05020 (AAYR28_05020) comK 997944..998522 (+) 579 WP_034282183.1 competence protein ComK Regulator
  AAYR28_RS05025 (AAYR28_05025) - 998821..999303 (+) 483 WP_034282182.1 hypothetical protein -
  AAYR28_RS05030 (AAYR28_05030) - 999586..999864 (+) 279 WP_024426542.1 barstar family protein -
  AAYR28_RS05035 (AAYR28_05035) ceuB 1000026..1000976 (+) 951 WP_120207356.1 ABC transporter permease Machinery gene
  AAYR28_RS05040 (AAYR28_05040) - 1000969..1001919 (+) 951 WP_024425487.1 iron chelate uptake ABC transporter family permease subunit -
  AAYR28_RS05045 (AAYR28_05045) - 1001910..1002668 (+) 759 WP_056766095.1 ATP-binding cassette domain-containing protein -
  AAYR28_RS05050 (AAYR28_05050) - 1002690..1003634 (+) 945 WP_120207354.1 siderophore ABC transporter substrate-binding protein -
  AAYR28_RS05055 (AAYR28_05055) - 1003773..1004726 (+) 954 WP_024425490.1 LCP family protein -
  AAYR28_RS05060 (AAYR28_05060) - 1004798..1005160 (-) 363 WP_120207352.1 hypothetical protein -
  AAYR28_RS05065 (AAYR28_05065) - 1005317..1005934 (+) 618 WP_024425492.1 TVP38/TMEM64 family protein -

Sequence


Protein


Download         Length: 316 a.a.        Molecular weight: 34953.32 Da        Isoelectric Point: 9.7475

>NTDB_id=995169 AAYR28_RS05035 WP_120207356.1 1000026..1000976(+) (ceuB) [Bacillus safensis strain FUA2117]
MKLYQLSLLFVCLACISLFVGVQDLSILQLFHLTDEQVHTLVSSRLPRLVSIVLAGMSLSLCGFIMQSMTRNKFVSPTTA
GTMDWAKLGILVAMLVFTQANPLMKMGIAFLFTLAGNLLFLKILRHIKVNDTIYVPLVGLMFGGIVSSISTFIAYKYDLI
QNVSTWLQGDFSLIVQGRYELLYVSVPLLIIAYLYADRFTVAGMGESFAVNLGLTYKRVMAVGLVIVSMITSVTILTVGM
LPFLGLIIPNIVSIYRGDHLKKSLPHTALLGAIFVLICDVLGRVIIYPYEISVGLMVGIIGSAIFLYMLLRRKRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=995169 AAYR28_RS05035 WP_120207356.1 1000026..1000976(+) (ceuB) [Bacillus safensis strain FUA2117]
ATGAAATTGTATCAATTAAGTTTGTTATTTGTATGTTTGGCATGTATATCTCTGTTTGTCGGTGTACAGGATCTGTCCAT
TTTACAGCTGTTTCATTTAACAGATGAACAAGTGCACACGTTAGTTTCAAGCCGCCTCCCGCGTCTCGTGAGTATTGTGC
TTGCTGGTATGAGCCTTAGTTTATGCGGCTTTATTATGCAAAGCATGACGAGGAATAAATTTGTTTCACCAACCACTGCA
GGAACGATGGATTGGGCGAAGCTTGGTATTTTAGTAGCAATGCTTGTTTTTACACAAGCGAATCCGCTTATGAAAATGGG
GATTGCGTTTCTATTTACTTTAGCTGGGAATCTTCTTTTCTTAAAAATCCTGCGGCATATTAAGGTGAACGATACGATTT
ATGTACCATTAGTCGGCTTAATGTTTGGGGGGATTGTCAGTTCAATATCTACGTTTATAGCCTATAAATATGATTTGATC
CAAAACGTATCCACATGGCTTCAAGGAGATTTTTCTCTTATTGTCCAAGGGCGTTATGAACTGCTCTATGTGAGCGTTCC
ACTATTGATCATTGCGTATTTATATGCTGACCGCTTTACAGTGGCAGGCATGGGCGAGAGCTTTGCCGTTAACTTAGGTT
TAACGTATAAACGTGTGATGGCGGTTGGGTTGGTGATCGTTTCAATGATTACGTCTGTCACCATTTTAACTGTCGGAATG
CTGCCATTCCTTGGATTAATCATTCCGAATATTGTATCGATCTACCGCGGCGATCACTTGAAAAAAAGCCTCCCGCATAC
AGCTTTACTAGGAGCTATTTTTGTTCTGATTTGTGATGTGCTCGGAAGGGTGATCATTTATCCATATGAAATATCAGTTG
GACTCATGGTAGGCATCATCGGAAGTGCGATCTTCCTGTACATGTTATTAAGGAGGAAACGCTATGCATAA

Domains


Predicted by InterproScan.

(10-311)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.495

95.253

0.491


Multiple sequence alignment