Detailed information
Bioinformatically predicted
Overview
| Name | comK | Type | Regulator |
| Locus tag | AAVD42_RS16935 | Genome accession | NZ_CP154908 |
| Coordinates | 3127244..3127822 (+) | Length | 192 a.a. |
| NCBI ID | WP_345807228.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain FUA2116 | ||
| Function | activate transcription of late competence genes (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3122244..3132822
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAVD42_RS16915 (AAVD42_16915) | - | 3122735..3124030 (-) | 1296 | WP_044140705.1 | globin-coupled sensor protein | - |
| AAVD42_RS16920 (AAVD42_16920) | - | 3124122..3125654 (-) | 1533 | WP_345807226.1 | FAD-dependent oxidoreductase | - |
| AAVD42_RS16925 (AAVD42_16925) | - | 3125800..3126660 (+) | 861 | WP_345807227.1 | SDR family oxidoreductase | - |
| AAVD42_RS16930 (AAVD42_16930) | - | 3126724..3126954 (-) | 231 | WP_003210924.1 | IDEAL domain-containing protein | - |
| AAVD42_RS16935 (AAVD42_16935) | comK | 3127244..3127822 (+) | 579 | WP_345807228.1 | competence protein ComK | Regulator |
| AAVD42_RS16940 (AAVD42_16940) | - | 3127981..3129087 (+) | 1107 | WP_345807229.1 | D-TA family PLP-dependent enzyme | - |
| AAVD42_RS16945 (AAVD42_16945) | - | 3129399..3129881 (+) | 483 | WP_340909782.1 | hypothetical protein | - |
| AAVD42_RS16950 (AAVD42_16950) | - | 3129992..3131142 (+) | 1151 | Protein_3113 | IS3 family transposase | - |
| AAVD42_RS16955 (AAVD42_16955) | - | 3131386..3131661 (+) | 276 | WP_044140712.1 | barstar family protein | - |
| AAVD42_RS16960 (AAVD42_16960) | ceuB | 3131834..3132784 (+) | 951 | WP_065098909.1 | ABC transporter permease | Machinery gene |
Sequence
Protein
Download Length: 192 a.a. Molecular weight: 22376.45 Da Isoelectric Point: 8.7996
>NTDB_id=995139 AAVD42_RS16935 WP_345807228.1 3127244..3127822(+) (comK) [Bacillus pumilus strain FUA2116]
MSGISETPLDSYVINQTTMAILPIEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVVFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY
MSGISETPLDSYVINQTTMAILPIEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHTFQESSLGDTVVVFTNEQTVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY
Nucleotide
Download Length: 579 bp
>NTDB_id=995139 AAVD42_RS16935 WP_345807228.1 3127244..3127822(+) (comK) [Bacillus pumilus strain FUA2116]
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGATCCTTCCGATTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGCA
GCTGCCGATTCTTCGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGAATTTCTCACAAGCCTCCC
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAAGAATCATCCCTCGGAGACACGGTGGTCGTCTTTACAAATGAGCAAACCGTCAAACTCG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTGCACAGAACAGCGTATCTCCGAACGAAATTTCAAGATCGCCTTGATGGT
GGTCTTCCTAAAAAACAAGAATTTATGCTGTATCCAAAGGAACAACAGCTCAACCTTGTATACGATTTTATATTAAGGGA
GCTTCGGAACAGATATTAA
GTGTCAGGAATTAGTGAAACACCTTTAGATTCATACGTCATTAATCAAACAACAATGGCGATCCTTCCGATTGAAGAAGG
AAAAAGAGTATATTCAAAAGTCATAGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCCCTGCAAATTATTGAACGCA
GCTGCCGATTCTTCGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGAATTTCTCACAAGCCTCCC
ATTGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGTCCTCAGTGCGGCTGGATCTCCCA
CAAATACATTCATACCTTCCAAGAATCATCCCTCGGAGACACGGTGGTCGTCTTTACAAATGAGCAAACCGTCAAACTCG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTGCACAGAACAGCGTATCTCCGAACGAAATTTCAAGATCGCCTTGATGGT
GGTCTTCCTAAAAAACAAGAATTTATGCTGTATCCAAAGGAACAACAGCTCAACCTTGTATACGATTTTATATTAAGGGA
GCTTCGGAACAGATATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comK | Bacillus subtilis subsp. subtilis str. 168 |
60.938 |
100 |
0.609 |