Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AAVD42_RS16960 Genome accession   NZ_CP154908
Coordinates   3131834..3132784 (+) Length   316 a.a.
NCBI ID   WP_065098909.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2116     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 3129992..3131142 3131834..3132784 flank 692


Gene organization within MGE regions


Location: 3129992..3132784
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD42_RS16950 (AAVD42_16950) - 3129992..3131142 (+) 1151 Protein_3113 IS3 family transposase -
  AAVD42_RS16955 (AAVD42_16955) - 3131386..3131661 (+) 276 WP_044140712.1 barstar family protein -
  AAVD42_RS16960 (AAVD42_16960) ceuB 3131834..3132784 (+) 951 WP_065098909.1 ABC transporter permease Machinery gene

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34876.21 Da        Isoelectric Point: 9.6341

>NTDB_id=995140 AAVD42_RS16960 WP_065098909.1 3131834..3132784(+) (ceuB) [Bacillus pumilus strain FUA2116]
MKLYQLSLLFVCLACVSLFVGVQDLSILQLFHLTDEQVHTLVSSRIPRLMSIVLAGMSLSLCGFIMQSMTRNKFVSPTTA
GTMDWAKLGILAAMLVFTHASPLMKMGIAFLFTLAGNLLFLKILRHIKVNDTIYVPLVGLMFGGIVSSISTFIAYKYDLI
QNVSAWLQGDFSLIVQGRYELLYVSVPLLIIAYLYADRFTVAGMGESFAINLGLTYKRVMAVGLVIVSMITSVTILTVGM
LPFLGLIIPNIVSIYRGDHLKKSLPHTALLGAIFVLICDVLGRVIIYPYEISVGLMVGIIGSGIFLYMLLRRKHYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=995140 AAVD42_RS16960 WP_065098909.1 3131834..3132784(+) (ceuB) [Bacillus pumilus strain FUA2116]
ATGAAGTTGTATCAATTAAGTTTATTATTTGTATGTTTGGCATGTGTATCACTGTTTGTAGGTGTACAGGATCTGTCCAT
TTTACAGCTGTTTCATTTAACAGATGAACAAGTGCATACGTTAGTTTCAAGTCGCATCCCGCGTCTCATGAGTATTGTGC
TTGCTGGCATGAGCCTTAGTTTATGCGGCTTTATTATGCAAAGCATGACGAGGAATAAATTTGTTTCACCAACCACTGCA
GGAACGATGGATTGGGCGAAGCTTGGTATTTTAGCAGCAATGCTTGTTTTTACACATGCGAGCCCGCTCATGAAAATGGG
AATCGCGTTTCTATTTACTTTAGCTGGGAATCTTCTTTTCTTAAAAATCCTGCGGCATATTAAGGTGAACGATACGATCT
ATGTACCTTTAGTCGGTTTAATGTTTGGCGGGATTGTCAGTTCAATATCTACGTTTATAGCCTATAAATATGATCTGATT
CAAAACGTATCCGCATGGCTTCAAGGGGATTTTTCTCTTATTGTTCAGGGGCGTTATGAACTTCTCTATGTGAGTGTTCC
ACTATTGATCATCGCGTATTTATATGCTGACCGCTTTACAGTGGCGGGTATGGGTGAGAGCTTTGCCATCAACTTAGGTT
TAACGTATAAACGTGTGATGGCGGTTGGTTTGGTGATTGTTTCGATGATTACATCTGTCACCATATTAACTGTCGGGATG
CTGCCATTCCTAGGCTTAATCATTCCGAATATTGTATCGATCTACCGCGGCGATCACTTGAAAAAGAGCCTTCCGCATAC
AGCCTTACTAGGAGCCATTTTTGTTCTGATTTGTGATGTGCTCGGAAGGGTAATCATTTATCCATATGAAATTTCAGTTG
GGCTCATGGTAGGCATCATCGGAAGTGGGATCTTCCTGTACATGTTATTAAGGAGGAAACACTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.827

95.253

0.494

Multiple sequence alignment