Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   AAVD42_RS07615 Genome accession   NZ_CP154908
Coordinates   1237428..1238069 (-) Length   213 a.a.
NCBI ID   WP_058013793.1    Uniprot ID   A0A2G8IV23
Organism   Bacillus pumilus strain FUA2116     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1232428..1243069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD42_RS07580 (AAVD42_07580) - 1233560..1233991 (+) 432 WP_034620105.1 Na(+)/H(+) antiporter subunit B -
  AAVD42_RS07585 (AAVD42_07585) - 1233991..1234332 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  AAVD42_RS07590 (AAVD42_07590) - 1234325..1235803 (+) 1479 WP_106066316.1 Na+/H+ antiporter subunit D -
  AAVD42_RS07595 (AAVD42_07595) - 1235810..1236289 (+) 480 WP_003213059.1 Na+/H+ antiporter subunit E -
  AAVD42_RS07600 (AAVD42_07600) - 1236289..1236570 (+) 282 WP_003213177.1 Na(+)/H(+) antiporter subunit F1 -
  AAVD42_RS07605 (AAVD42_07605) mnhG 1236554..1236928 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  AAVD42_RS07610 (AAVD42_07610) - 1237015..1237404 (-) 390 WP_106066313.1 hotdog fold thioesterase -
  AAVD42_RS07615 (AAVD42_07615) comA 1237428..1238069 (-) 642 WP_058013793.1 response regulator transcription factor Regulator
  AAVD42_RS07620 (AAVD42_07620) comP 1238150..1240441 (-) 2292 WP_345808100.1 ATP-binding protein Regulator
  AAVD42_RS07625 (AAVD42_07625) comX 1240448..1240627 (-) 180 WP_345808101.1 competence pheromone ComX -
  AAVD42_RS07630 (AAVD42_07630) - 1240605..1241528 (-) 924 WP_345808102.1 polyprenyl synthetase family protein -
  AAVD42_RS07635 (AAVD42_07635) degQ 1241680..1241820 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  AAVD42_RS07640 (AAVD42_07640) - 1242326..1242679 (+) 354 WP_345808103.1 inner spore coat protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24154.55 Da        Isoelectric Point: 4.5688

>NTDB_id=995113 AAVD42_RS07615 WP_058013793.1 1237428..1238069(-) (comA) [Bacillus pumilus strain FUA2116]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=995113 AAVD42_RS07615 WP_058013793.1 1237428..1238069(-) (comA) [Bacillus pumilus strain FUA2116]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTCTAGAAACCAACCAACAAGTGAAAATCATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCCATTCGGGCTGGATTGCACGGTGCAATTAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACCGATCACGAGCTGTTAACAGAGCGAGAGTGTTTGATC
CTCAGAGAAGTGGAAAAAGGATACACGAACCAAGAGATTGCCGATGTGCTGCATTTGAGCAAACGCTCGATTGAATACAG
CTTGACGTCCATCTTTAATAAGCTGAATGTTGGCTCTCGAACCGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G8IV23

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718

Multiple sequence alignment