Detailed information
Bioinformatically predicted
Overview
| Name | sinR | Type | Regulator |
| Locus tag | AAVC22_RS19690 | Genome accession | NZ_CP154902 |
| Coordinates | 3883563..3883898 (-) | Length | 111 a.a. |
| NCBI ID | WP_023855185.1 | Uniprot ID | - |
| Organism | Bacillus paralicheniformis strain FUA2150 | ||
| Function | repression of rok; repression of degU; repression of spo0A (predicted from homology) Competence regulation |
||
Genomic Context
Location: 3878563..3888898
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAVC22_RS19645 (AAVC22_19650) | comGD | 3878841..3879278 (+) | 438 | WP_020452175.1 | competence type IV pilus minor pilin ComGD | - |
| AAVC22_RS19650 (AAVC22_19655) | comGE | 3879262..3879609 (+) | 348 | WP_025811161.1 | competence type IV pilus minor pilin ComGE | - |
| AAVC22_RS19655 (AAVC22_19660) | comGF | 3879524..3880006 (+) | 483 | WP_230588654.1 | competence type IV pilus minor pilin ComGF | - |
| AAVC22_RS19660 (AAVC22_19665) | comGG | 3880018..3880383 (+) | 366 | WP_025811163.1 | competence type IV pilus minor pilin ComGG | - |
| AAVC22_RS19665 (AAVC22_19670) | - | 3880472..3880654 (+) | 183 | WP_020452171.1 | YqzE family protein | - |
| AAVC22_RS19670 (AAVC22_19675) | - | 3880684..3881004 (-) | 321 | WP_023855188.1 | YqzG/YhdC family protein | - |
| AAVC22_RS19675 (AAVC22_19680) | tapA | 3881282..3882010 (+) | 729 | WP_020452169.1 | amyloid fiber anchoring/assembly protein TapA | - |
| AAVC22_RS19680 (AAVC22_19685) | - | 3882007..3882591 (+) | 585 | WP_035338370.1 | signal peptidase I | - |
| AAVC22_RS19685 (AAVC22_19690) | - | 3882664..3883458 (+) | 795 | WP_020452167.1 | TasA family protein | - |
| AAVC22_RS19690 (AAVC22_19695) | sinR | 3883563..3883898 (-) | 336 | WP_023855185.1 | helix-turn-helix domain-containing protein | Regulator |
| AAVC22_RS19695 (AAVC22_19700) | sinI | 3883932..3884108 (-) | 177 | WP_023855184.1 | anti-repressor SinI family protein | Regulator |
| AAVC22_RS19700 (AAVC22_19705) | - | 3884299..3885093 (-) | 795 | WP_020452164.1 | YqhG family protein | - |
| AAVC22_RS19705 (AAVC22_19710) | - | 3885100..3886779 (-) | 1680 | WP_020452163.1 | SNF2-related protein | - |
| AAVC22_RS19710 (AAVC22_19715) | gcvT | 3887374..3888468 (+) | 1095 | WP_035338369.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 111 a.a. Molecular weight: 12962.60 Da Isoelectric Point: 7.0171
>NTDB_id=995033 AAVC22_RS19690 WP_023855185.1 3883563..3883898(-) (sinR) [Bacillus paralicheniformis strain FUA2150]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEN
LVRDAMASGVSKKQFREFLDYQKWKKRQEKE
Nucleotide
Download Length: 336 bp
>NTDB_id=995033 AAVC22_RS19690 WP_023855185.1 3883563..3883898(-) (sinR) [Bacillus paralicheniformis strain FUA2150]
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCAATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA
TTGATTGGCCAGCGTATTAAACAATATCGAAAAGAAAAAGGCTACTCACTATCTGAACTAGCTGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTAGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACCCTGCTCAATGAGAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAT
CTAGTTCGTGACGCTATGGCATCAGGGGTTTCTAAAAAACAATTTCGAGAATTTTTAGATTATCAAAAGTGGAAGAAAAG
ACAGGAAAAGGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sinR | Bacillus subtilis subsp. subtilis str. 168 |
92.793 |
100 |
0.928 |