Detailed information NTG0994889

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: AAVC70_RS19435
• Genome accession: NZ_CP154898
• Coordinates: 3542478..3543257 (+)
• Length: 259 a.a.
• NCBI ID: WP_013352252.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain Fad 97
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 3537478..3548257

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAVC70_RS19415 (AAVC70_19415)	trmFO	3538165..3539472 (+)	1308	WP_013352248.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
AAVC70_RS19420 (AAVC70_19420)	xerC	3539542..3540459 (+)	918	WP_013352249.1	tyrosine recombinase XerC	-
AAVC70_RS19425 (AAVC70_19425)	hslV	3540475..3541020 (+)	546	WP_013352250.1	ATP-dependent protease subunit HslV	-
AAVC70_RS19430 (AAVC70_19430)	hslU	3541028..3542440 (+)	1413	WP_258565086.1	HslU--HslV peptidase ATPase subunit	-
AAVC70_RS19435 (AAVC70_19435)	codY	3542478..3543257 (+)	780	WP_013352252.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
AAVC70_RS19440 (AAVC70_19440)	flgB	3543611..3544000 (+)	390	WP_013352253.1	flagellar basal body rod protein FlgB	-
AAVC70_RS19445 (AAVC70_19445)	flgC	3544000..3544452 (+)	453	WP_013352254.1	flagellar basal body rod protein FlgC	-
AAVC70_RS19450 (AAVC70_19450)	fliE	3544463..3544783 (+)	321	WP_007409777.1	flagellar hook-basal body complex protein FliE	-
AAVC70_RS19455 (AAVC70_19455)	fliF	3544826..3546436 (+)	1611	WP_013352255.1	flagellar basal-body MS-ring/collar protein FliF	-
AAVC70_RS19460 (AAVC70_19460)	fliG	3546449..3547465 (+)	1017	WP_146289827.1	flagellar motor switch protein FliG	-
AAVC70_RS19465 (AAVC70_19465)	fliH	3547458..3548213 (+)	756	WP_013352257.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29028.23 Da
• Isoelectric Point: 4.6017

>NTDB_id=994889 AAVC70_RS19435 WP_013352252.1 3542478..3543257(+) (codY) [Bacillus amyloliquefaciens strain Fad 97]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=994889 AAVC70_RS19435 WP_013352252.1 3542478..3543257(+) (codY) [Bacillus amyloliquefaciens strain Fad 97]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTAGGCTACTCTATTA
ATCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTGGAAGACCGCCAGTTCCCGGAAGAGTACACGAAAAATCTGTTC
AACGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCATTTCCTGTTGAAAACAGAGACCTGTTCCA
GGCAGGCTTAACGACGATTGTTCCGATTATCGGCGGAGGCGAGCGTCTGGGCACATTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAAGCGCGAAGCAAAGCAGTCGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTGGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCCGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACT
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAGTTGGAAAATCTTAAATCACATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	99.614	100	0.996
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467