Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   EW033_RS09235 Genome accession   NZ_LR130515
Coordinates   1801950..1803212 (-) Length   420 a.a.
NCBI ID   WP_000472306.1    Uniprot ID   -
Organism   Staphylococcus aureus strain BPH2947 isolate BPH2947     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1796950..1808212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EW033_RS09210 - 1797148..1797816 (-) 669 WP_000805950.1 uroporphyrinogen-III synthase -
  EW033_RS09215 hemC 1797838..1798764 (-) 927 WP_001230228.1 hydroxymethylbilane synthase -
  EW033_RS09220 ccsA 1798806..1799621 (-) 816 WP_001157329.1 cytochrome c biogenesis protein -
  EW033_RS09225 hemA 1799643..1800989 (-) 1347 WP_000545451.1 glutamyl-tRNA reductase -
  EW033_RS09230 yihA 1801206..1801796 (-) 591 WP_000867697.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  EW033_RS09235 clpX 1801950..1803212 (-) 1263 WP_000472306.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  EW033_RS09240 tig 1803363..1804664 (-) 1302 WP_000127573.1 trigger factor -
  EW033_RS09245 - 1804712..1804822 (-) 111 WP_001790560.1 hypothetical protein -
  EW033_RS09250 - 1804827..1805756 (-) 930 WP_001280018.1 hypothetical protein -
  EW033_RS09255 - 1805775..1806383 (-) 609 WP_000032657.1 NUDIX domain-containing protein -
  EW033_RS09265 rplT 1806525..1806881 (-) 357 WP_001138360.1 50S ribosomal protein L20 -
  EW033_RS09270 rpmI 1806928..1807128 (-) 201 WP_001125540.1 50S ribosomal protein L35 -
  EW033_RS09275 infC 1807157..1807684 (-) 528 WP_001791162.1 translation initiation factor IF-3 -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46287.44 Da        Isoelectric Point: 4.2645

>NTDB_id=994889 EW033_RS09235 WP_000472306.1 1801950..1803212(-) (clpX) [Staphylococcus aureus strain BPH2947 isolate BPH2947]
MFKFNEDEENLKCSFCGKDQDQVKKLVAGSGVYICNECIELCSEIVEEELAQNTSEAMTELPTPKEIMDHLNEYVIGQEK
AKKSLAVAVYNHYKRIQQLGSKEDDVELQKSNIALIGPTGSGKTLLAQTLAKTLNVPFAIADATSLTEAGYVGDDVENIL
LRLIQAADFDIDKAEKGIIYVDEIDKIARKSENTSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPNQEMIQIDTTN
ILFILGGAFDGIEEVIKRRLGEKVIGFSSNEADKYDEQALLAQIRPEDLQAYGLIPEFIGRVPIVANLETLDVTALKNIL
TQPKNALVKQYTKMLELDDVDLEFTEEALSAISEKAIERKTGARGLRSIIEESLIDIMFDVPSNENVTKVVITAQTINEE
TEPELYDAEGNLINNSKTSA

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=994889 EW033_RS09235 WP_000472306.1 1801950..1803212(-) (clpX) [Staphylococcus aureus strain BPH2947 isolate BPH2947]
ATGTTTAAATTCAATGAAGATGAAGAAAATTTGAAATGCTCTTTCTGCGGAAAAGACCAAGATCAAGTAAAAAAACTTGT
AGCAGGAAGTGGTGTATATATTTGTAATGAGTGTATTGAATTATGCTCAGAAATCGTCGAAGAAGAATTAGCTCAAAACA
CTTCTGAAGCGATGACAGAATTACCTACTCCTAAAGAAATTATGGATCATTTAAACGAATATGTTATTGGTCAAGAAAAA
GCTAAAAAATCTTTAGCTGTAGCTGTTTATAACCACTATAAGCGTATTCAACAATTAGGATCAAAAGAAGATGATGTTGA
ATTACAAAAAAGTAACATTGCATTAATTGGGCCAACAGGTAGTGGTAAAACATTATTAGCTCAAACCTTAGCCAAGACGT
TGAATGTACCATTTGCAATTGCAGATGCGACAAGTTTAACTGAAGCTGGTTATGTAGGCGATGATGTTGAAAATATCTTG
TTGAGATTAATTCAAGCAGCTGACTTTGACATTGATAAAGCCGAAAAAGGTATTATTTATGTAGATGAAATTGATAAAAT
TGCACGTAAATCTGAAAACACATCTATAACACGTGACGTTTCAGGTGAAGGTGTTCAACAAGCATTGCTTAAAATCTTAG
AAGGTACGACTGCAAGTGTTCCGCCACAAGGTGGACGCAAACATCCAAACCAAGAAATGATTCAAATTGATACAACAAAT
ATCTTATTTATTCTTGGTGGTGCCTTTGATGGTATTGAAGAAGTGATTAAGCGCCGTCTTGGTGAAAAAGTTATTGGTTT
CTCAAGCAATGAAGCTGATAAATATGACGAACAAGCATTATTAGCACAAATTCGCCCAGAAGATTTGCAAGCCTATGGTT
TGATTCCTGAATTTATCGGACGTGTGCCAATTGTAGCTAATTTAGAAACATTAGATGTAACTGCGTTGAAAAACATCTTA
ACGCAACCTAAAAATGCACTTGTGAAACAATATACTAAAATGCTGGAATTAGATGATGTGGATTTAGAGTTCACTGAAGA
AGCTTTATCAGCAATTAGTGAAAAAGCAATTGAAAGAAAAACAGGTGCGCGTGGTTTACGTTCAATCATAGAAGAATCGT
TAATCGATATTATGTTTGATGTGCCTTCTAACGAAAATGTAACGAAGGTAGTTATTACAGCACAAACAATTAATGAAGAA
ACTGAACCAGAACTATACGACGCAGAAGGCAATTTAATTAATAATAGTAAAACATCAGCTTAA

Domains

Predicted by InterProScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-389)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)

AAA domain (Cdc48 subfamily) (AAA_2)

(109-305)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

67.168

95

0.638
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.456

94.048

0.531

Multiple sequence alignment