Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   ABBFA_RS16665 Genome accession   NZ_CP001172
Coordinates   3506420..3507055 (+) Length   211 a.a.
NCBI ID   WP_000633799.1    Uniprot ID   A0AA36K8B3
Organism   Acinetobacter baumannii AB307-0294     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3501420..3512055
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABBFA_RS16645 (ABBFA_03265) - 3501496..3502311 (+) 816 WP_000011168.1 DsbC family protein -
  ABBFA_RS16650 (ABBFA_03266) - 3502556..3503857 (+) 1302 WP_000805827.1 homoserine dehydrogenase -
  ABBFA_RS16655 (ABBFA_03267) thrC 3503913..3505052 (+) 1140 WP_000063593.1 threonine synthase -
  ABBFA_RS16660 (ABBFA_03268) pbpG 3505161..3506207 (-) 1047 WP_001984577.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  ABBFA_RS16665 (ABBFA_03269) letA 3506420..3507055 (+) 636 WP_000633799.1 response regulator Regulator
  ABBFA_RS16670 (ABBFA_03270) pilS 3507066..3508634 (+) 1569 WP_001160337.1 PAS domain-containing sensor histidine kinase Regulator
  ABBFA_RS16675 (ABBFA_03271) - 3508659..3510080 (+) 1422 WP_000840548.1 sigma-54 dependent transcriptional regulator -
  ABBFA_RS16680 (ABBFA_03272) - 3510084..3511268 (-) 1185 WP_000939109.1 S41 family peptidase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23147.79 Da        Isoelectric Point: 5.0959

>NTDB_id=99484 ABBFA_RS16665 WP_000633799.1 3506420..3507055(+) (letA) [Acinetobacter baumannii AB307-0294]
MITVLVVDDHELVRTGICRMLEDHADVEVIGQAESGEEAIAIVRQQHPQVVLLDVNMPGIGGVETTRRLLQTAPETKVIA
VSGLAEEPYPSLLLKAGAKGYITKGAPIAEMVRAINKVMQGGKYFSADIAEQLASSYLSDTQQSPFDSLSEREMQVAMMV
VNCISAQEIADKLFVSVKTVNTYRYRIFEKLGIDSDVKLTHLAIRYGLIKP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=99484 ABBFA_RS16665 WP_000633799.1 3506420..3507055(+) (letA) [Acinetobacter baumannii AB307-0294]
TTGATTACAGTTTTAGTTGTCGATGACCATGAACTGGTACGTACGGGTATTTGCCGTATGTTAGAAGATCATGCCGATGT
TGAGGTAATTGGACAAGCCGAATCGGGCGAAGAAGCAATTGCTATCGTTCGCCAACAACATCCGCAAGTCGTACTGCTGG
ATGTCAACATGCCGGGCATCGGTGGCGTAGAAACAACCCGTCGTTTATTACAGACGGCTCCAGAGACGAAAGTCATTGCT
GTAAGCGGCCTTGCCGAAGAGCCTTACCCATCTTTATTATTAAAAGCCGGTGCAAAAGGCTATATCACTAAAGGCGCGCC
AATTGCCGAAATGGTTCGTGCAATTAATAAGGTCATGCAAGGCGGTAAATATTTTAGTGCAGATATTGCCGAACAACTCG
CGAGCTCATATTTATCCGACACTCAACAATCCCCTTTTGATTCATTATCGGAACGGGAAATGCAAGTTGCAATGATGGTC
GTCAACTGTATTAGTGCCCAAGAAATTGCCGATAAACTTTTTGTAAGTGTGAAAACTGTAAATACTTACCGTTATCGTAT
TTTTGAAAAGTTAGGAATTGATAGCGATGTAAAACTAACACATCTTGCGATTCGTTACGGTTTGATCAAGCCATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36K8B3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

55.238

99.526

0.55
  letA Legionella pneumophila strain ERS1305867

55.238

99.526

0.55