Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | AAVB98_RS08570 | Genome accession | NZ_CP154895 |
| Coordinates | 1624109..1626544 (-) | Length | 811 a.a. |
| NCBI ID | WP_013350791.1 | Uniprot ID | - |
| Organism | Bacillus amyloliquefaciens strain Fad 77 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 1619109..1631544
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAVB98_RS08545 (AAVB98_08545) | ispF | 1619155..1619631 (-) | 477 | WP_013350796.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
| AAVB98_RS08550 (AAVB98_08550) | ispD | 1619624..1620322 (-) | 699 | WP_038463178.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| AAVB98_RS08555 (AAVB98_08555) | - | 1620336..1621436 (-) | 1101 | WP_013350794.1 | PIN/TRAM domain-containing protein | - |
| AAVB98_RS08560 (AAVB98_08560) | disA | 1621550..1622632 (-) | 1083 | WP_013350793.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| AAVB98_RS08565 (AAVB98_08565) | radA | 1622636..1624015 (-) | 1380 | WP_061573662.1 | DNA repair protein RadA | Machinery gene |
| AAVB98_RS08570 (AAVB98_08570) | clpC | 1624109..1626544 (-) | 2436 | WP_013350791.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| AAVB98_RS08575 (AAVB98_08575) | - | 1626541..1627632 (-) | 1092 | WP_013350790.1 | protein arginine kinase | - |
| AAVB98_RS08580 (AAVB98_08580) | - | 1627632..1628189 (-) | 558 | WP_013350789.1 | UvrB/UvrC motif-containing protein | - |
| AAVB98_RS08585 (AAVB98_08585) | ctsR | 1628203..1628667 (-) | 465 | WP_003156396.1 | transcriptional regulator CtsR | - |
Sequence
Protein
Download Length: 811 a.a. Molecular weight: 90178.61 Da Isoelectric Point: 5.7566
>NTDB_id=994771 AAVB98_RS08570 WP_013350791.1 1624109..1626544(-) (clpC) [Bacillus amyloliquefaciens strain Fad 77]
MMFGRFTERAQKVLALAQEEALRLGHTNIGTEHILLGLVREGEGIAFKALEALGLNSDKMQKEVESLIGRGQESTTSVPH
YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGTSGAGTNSSAN
TPTLDSLARDLTAIAREDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDEPSVDESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMV
VSSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRVDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDESQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
TDIVSLMSDQLTKRLKEQDLSIELTEAAKAKVADEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDG
EFVVKTTAKTN
MMFGRFTERAQKVLALAQEEALRLGHTNIGTEHILLGLVREGEGIAFKALEALGLNSDKMQKEVESLIGRGQESTTSVPH
YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGTSGAGTNSSAN
TPTLDSLARDLTAIAREDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDEPSVDESIQILKGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREQVEDTKKTWKEKQGQENSEVSVEDIAMV
VSSWTGVPVSKIAQTETDKLLNMESILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRVDMSEYMEKHSTSRLVGSPPGYVGYDEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDESQNHKDMKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
TDIVSLMSDQLTKRLKEQDLSIELTEAAKAKVADEGVDLEYGARPLRRAIQKHVEDRLSEELLRGNIDKGQHIVLDVEDG
EFVVKTTAKTN
Nucleotide
Download Length: 2436 bp
>NTDB_id=994771 AAVB98_RS08570 WP_013350791.1 1624109..1626544(-) (clpC) [Bacillus amyloliquefaciens strain Fad 77]
ATGATGTTTGGAAGATTTACAGAGCGAGCTCAAAAGGTATTGGCACTGGCACAGGAAGAAGCACTGCGCTTAGGCCATAC
AAATATCGGAACTGAACATATATTATTGGGGTTAGTCCGTGAAGGTGAAGGGATAGCATTTAAAGCCTTAGAAGCGCTGG
GCCTCAATTCAGATAAAATGCAAAAAGAAGTGGAAAGTTTGATTGGCCGAGGACAGGAAAGCACCACATCTGTCCCTCAT
TACACGCCTCGAGCAAAAAAGGTAATAGAACTCTCAATGGATGAAGCCAGAAAGCTGGGACATTCTTATGTAGGAACAGA
ACACATACTTCTCGGGCTGATTCGTGAAGGTGAGGGAGTCGCCGCGAGAGTTCTGAATAATCTGGGTGTCAGTCTCAATA
AGGCGAGACAGCAGGTTCTTCAGCTTCTCGGAAGCAATGAAACAGGGACATCTGGAGCCGGAACAAATAGCAGCGCAAAC
ACTCCGACGCTTGACAGTCTGGCGCGTGATTTAACCGCGATTGCGAGGGAAGACAGCCTTGATCCGGTTATCGGCCGAAG
CAAAGAAATTCAGCGTGTTATTGAGGTATTAAGCCGCAGAACAAAGAATAACCCCGTTCTTATTGGAGAACCGGGTGTAG
GTAAAACTGCGATTGCCGAAGGCCTCGCACAGCAGATCATCAACAATGAAGTGCCGGAAATTTTACGTGATAAACGCGTA
ATGACGTTAGATATGGGGACGGTTGTAGCCGGCACGAAATACCGCGGAGAATTTGAAGACCGCTTGAAAAAGGTAATGGA
TGAAATACGTCAGGCCGGCAATATCATTTTATTCATTGATGAACTGCACACACTGATCGGAGCGGGAGGAGCAGAAGGTG
CGATTGACGCGTCGAATATTTTAAAACCTTCATTGGCGCGCGGAGAGCTTCAGTGCATCGGTGCGACAACGCTTGATGAA
TACCGCAAATATATCGAAAAAGACGCAGCCCTGGAGCGCCGTTTCCAGCCGATTCAGGTGGATGAGCCGTCAGTCGATGA
AAGCATTCAAATTTTAAAAGGACTCCGTGACCGCTATGAAGCGCATCACCGCGTATCCATTACTGATGAAGCGATCGAAG
CGGCAGTTAAATTGTCCGACCGTTATATATCTGACCGCTTCCTTCCGGATAAAGCGATCGATTTAATTGACGAAGCCGGT
TCAAAAGTGCGTCTCCGTTCTTTCACAACGCCTCCGAACTTAAAAGAGCTTGAGCAGAAGCTTGATGAAGTTCGCAAGGA
AAAAGACGCTGCCGTTCAAAGCCAGGAATTTGAAAAAGCGGCTTCTCTTCGTGATACGGAGCAGCGCCTGAGAGAACAGG
TGGAAGATACGAAAAAAACGTGGAAAGAAAAACAAGGCCAAGAGAACTCCGAAGTTTCTGTAGAGGATATCGCGATGGTT
GTATCCAGCTGGACCGGGGTGCCTGTATCTAAAATTGCGCAAACGGAAACAGATAAGCTTCTCAATATGGAAAGCATTCT
GCACTCTCGTGTCATTGGCCAGGATGAAGCCGTTGTAGCCGTTGCAAAGGCTGTGAGACGTGCAAGAGCCGGTCTGAAGG
ATCCGAAACGTCCGATTGGTTCATTCATCTTCTTAGGTCCTACAGGCGTAGGGAAGACAGAGCTGGCAAGAGCACTGGCG
GAATCCATTTTCGGTGATGAGGAAGCGATGATCAGAGTGGATATGTCCGAATACATGGAGAAACATTCGACTTCACGCCT
TGTCGGTTCTCCTCCGGGATATGTCGGCTATGATGAAGGCGGCCAGCTGACAGAAAAAGTGAGAAGAAAACCTTACTCTG
TCGTACTGCTTGATGAAATTGAAAAAGCGCATCCTGATGTGTTTAACATTCTCTTGCAAGTGCTTGAAGACGGACGCTTG
ACTGATTCAAAAGGACGCACTGTTGATTTCCGCAACACGATCCTGATTATGACGTCAAACGTCGGAGCGAGCGAGCTGAA
ACGCAACAAATATGTCGGCTTCAATGTTCAGGATGAATCACAAAACCATAAAGACATGAAAGACAAAGTGATGGGAGAGC
TGAAGCGTGCCTTCAGGCCTGAGTTTATCAACCGGATTGACGAAATTATCGTCTTCCACTCCCTTGAGAAAAAACATCTT
ACAGACATCGTGTCGCTTATGTCTGACCAGTTAACAAAACGTCTGAAAGAACAAGATCTCTCTATAGAGCTGACAGAAGC
TGCAAAAGCAAAAGTAGCAGACGAGGGCGTCGATTTGGAATACGGCGCACGTCCGTTAAGAAGAGCGATCCAAAAGCATG
TGGAGGACCGTTTATCAGAAGAGCTCCTCAGAGGCAATATTGATAAAGGGCAGCACATCGTTCTTGATGTAGAGGACGGC
GAATTTGTCGTAAAAACGACTGCTAAAACGAACTAA
ATGATGTTTGGAAGATTTACAGAGCGAGCTCAAAAGGTATTGGCACTGGCACAGGAAGAAGCACTGCGCTTAGGCCATAC
AAATATCGGAACTGAACATATATTATTGGGGTTAGTCCGTGAAGGTGAAGGGATAGCATTTAAAGCCTTAGAAGCGCTGG
GCCTCAATTCAGATAAAATGCAAAAAGAAGTGGAAAGTTTGATTGGCCGAGGACAGGAAAGCACCACATCTGTCCCTCAT
TACACGCCTCGAGCAAAAAAGGTAATAGAACTCTCAATGGATGAAGCCAGAAAGCTGGGACATTCTTATGTAGGAACAGA
ACACATACTTCTCGGGCTGATTCGTGAAGGTGAGGGAGTCGCCGCGAGAGTTCTGAATAATCTGGGTGTCAGTCTCAATA
AGGCGAGACAGCAGGTTCTTCAGCTTCTCGGAAGCAATGAAACAGGGACATCTGGAGCCGGAACAAATAGCAGCGCAAAC
ACTCCGACGCTTGACAGTCTGGCGCGTGATTTAACCGCGATTGCGAGGGAAGACAGCCTTGATCCGGTTATCGGCCGAAG
CAAAGAAATTCAGCGTGTTATTGAGGTATTAAGCCGCAGAACAAAGAATAACCCCGTTCTTATTGGAGAACCGGGTGTAG
GTAAAACTGCGATTGCCGAAGGCCTCGCACAGCAGATCATCAACAATGAAGTGCCGGAAATTTTACGTGATAAACGCGTA
ATGACGTTAGATATGGGGACGGTTGTAGCCGGCACGAAATACCGCGGAGAATTTGAAGACCGCTTGAAAAAGGTAATGGA
TGAAATACGTCAGGCCGGCAATATCATTTTATTCATTGATGAACTGCACACACTGATCGGAGCGGGAGGAGCAGAAGGTG
CGATTGACGCGTCGAATATTTTAAAACCTTCATTGGCGCGCGGAGAGCTTCAGTGCATCGGTGCGACAACGCTTGATGAA
TACCGCAAATATATCGAAAAAGACGCAGCCCTGGAGCGCCGTTTCCAGCCGATTCAGGTGGATGAGCCGTCAGTCGATGA
AAGCATTCAAATTTTAAAAGGACTCCGTGACCGCTATGAAGCGCATCACCGCGTATCCATTACTGATGAAGCGATCGAAG
CGGCAGTTAAATTGTCCGACCGTTATATATCTGACCGCTTCCTTCCGGATAAAGCGATCGATTTAATTGACGAAGCCGGT
TCAAAAGTGCGTCTCCGTTCTTTCACAACGCCTCCGAACTTAAAAGAGCTTGAGCAGAAGCTTGATGAAGTTCGCAAGGA
AAAAGACGCTGCCGTTCAAAGCCAGGAATTTGAAAAAGCGGCTTCTCTTCGTGATACGGAGCAGCGCCTGAGAGAACAGG
TGGAAGATACGAAAAAAACGTGGAAAGAAAAACAAGGCCAAGAGAACTCCGAAGTTTCTGTAGAGGATATCGCGATGGTT
GTATCCAGCTGGACCGGGGTGCCTGTATCTAAAATTGCGCAAACGGAAACAGATAAGCTTCTCAATATGGAAAGCATTCT
GCACTCTCGTGTCATTGGCCAGGATGAAGCCGTTGTAGCCGTTGCAAAGGCTGTGAGACGTGCAAGAGCCGGTCTGAAGG
ATCCGAAACGTCCGATTGGTTCATTCATCTTCTTAGGTCCTACAGGCGTAGGGAAGACAGAGCTGGCAAGAGCACTGGCG
GAATCCATTTTCGGTGATGAGGAAGCGATGATCAGAGTGGATATGTCCGAATACATGGAGAAACATTCGACTTCACGCCT
TGTCGGTTCTCCTCCGGGATATGTCGGCTATGATGAAGGCGGCCAGCTGACAGAAAAAGTGAGAAGAAAACCTTACTCTG
TCGTACTGCTTGATGAAATTGAAAAAGCGCATCCTGATGTGTTTAACATTCTCTTGCAAGTGCTTGAAGACGGACGCTTG
ACTGATTCAAAAGGACGCACTGTTGATTTCCGCAACACGATCCTGATTATGACGTCAAACGTCGGAGCGAGCGAGCTGAA
ACGCAACAAATATGTCGGCTTCAATGTTCAGGATGAATCACAAAACCATAAAGACATGAAAGACAAAGTGATGGGAGAGC
TGAAGCGTGCCTTCAGGCCTGAGTTTATCAACCGGATTGACGAAATTATCGTCTTCCACTCCCTTGAGAAAAAACATCTT
ACAGACATCGTGTCGCTTATGTCTGACCAGTTAACAAAACGTCTGAAAGAACAAGATCTCTCTATAGAGCTGACAGAAGC
TGCAAAAGCAAAAGTAGCAGACGAGGGCGTCGATTTGGAATACGGCGCACGTCCGTTAAGAAGAGCGATCCAAAAGCATG
TGGAGGACCGTTTATCAGAAGAGCTCCTCAGAGGCAATATTGATAAAGGGCAGCACATCGTTCTTGATGTAGAGGACGGC
GAATTTGTCGTAAAAACGACTGCTAAAACGAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
96.301 |
100 |
0.963 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
49.689 |
99.014 |
0.492 |
| clpC | Streptococcus thermophilus LMD-9 |
46.481 |
100 |
0.472 |
| clpC | Streptococcus thermophilus LMG 18311 |
46.238 |
100 |
0.47 |
| clpC | Streptococcus mutans UA159 |
44.632 |
100 |
0.456 |
| clpC | Streptococcus pneumoniae D39 |
45.264 |
100 |
0.454 |
| clpC | Streptococcus pneumoniae Rx1 |
45.264 |
100 |
0.454 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.141 |
100 |
0.453 |
| clpE | Streptococcus mutans UA159 |
53.775 |
80.025 |
0.43 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.417 |
81.628 |
0.428 |
| clpE | Streptococcus pneumoniae Rx1 |
52.417 |
81.628 |
0.428 |
| clpE | Streptococcus pneumoniae D39 |
52.417 |
81.628 |
0.428 |
| clpE | Streptococcus pneumoniae R6 |
52.417 |
81.628 |
0.428 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
50.291 |
84.834 |
0.427 |