Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AAVB98_RS08565 Genome accession   NZ_CP154895
Coordinates   1622636..1624015 (-) Length   459 a.a.
NCBI ID   WP_061573662.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 77     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1617636..1629015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB98_RS08545 (AAVB98_08545) ispF 1619155..1619631 (-) 477 WP_013350796.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  AAVB98_RS08550 (AAVB98_08550) ispD 1619624..1620322 (-) 699 WP_038463178.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  AAVB98_RS08555 (AAVB98_08555) - 1620336..1621436 (-) 1101 WP_013350794.1 PIN/TRAM domain-containing protein -
  AAVB98_RS08560 (AAVB98_08560) disA 1621550..1622632 (-) 1083 WP_013350793.1 DNA integrity scanning diadenylate cyclase DisA -
  AAVB98_RS08565 (AAVB98_08565) radA 1622636..1624015 (-) 1380 WP_061573662.1 DNA repair protein RadA Machinery gene
  AAVB98_RS08570 (AAVB98_08570) clpC 1624109..1626544 (-) 2436 WP_013350791.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  AAVB98_RS08575 (AAVB98_08575) - 1626541..1627632 (-) 1092 WP_013350790.1 protein arginine kinase -
  AAVB98_RS08580 (AAVB98_08580) - 1627632..1628189 (-) 558 WP_013350789.1 UvrB/UvrC motif-containing protein -
  AAVB98_RS08585 (AAVB98_08585) ctsR 1628203..1628667 (-) 465 WP_003156396.1 transcriptional regulator CtsR -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49469.86 Da        Isoelectric Point: 6.8943

>NTDB_id=994770 AAVB98_RS08565 WP_061573662.1 1622636..1624015(-) (radA) [Bacillus amyloliquefaciens strain Fad 77]
MAKSKTKFICHSCGYESAKWMGKCPGCGAWNTMVEETIKKAPANRRAAFSHSVQTVQKPSPITSIETSEEPRVQTKLEEF
NRVLGGGVVKGSLVLIGGDPGIGKSTLLLQVSAQLADTAGSVLYISGEESVKQTKLRADRLGINSQLLHVLSETDMEYIS
SAIQEMKPAFVVVDSIQTVYQSDITSAPGSVSQVRECTAELMKIAKTNGIPIFIVGHVTKEGSIAGPRLLEHMVDTVLYF
EGERHHTFRILRAVKNRFGSTNEMGIFEMREEGLTEVLNPSEIFLEERSAGASGSSIVASMEGTRPILVEIQALISPTSF
GNPCRMATGIDHNRVSLIMAVLEKRVGLLLQNQDAYLKVAGGVKLDEPAIDLAVAVSIASSFRDTPPNPADCFIGEVGLT
GEVRRVSRIEQRVKEAAKLGFKRMVIPEANSDGWTIPKGIEVVGVANVAEALRTSLGGS

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=994770 AAVB98_RS08565 WP_061573662.1 1622636..1624015(-) (radA) [Bacillus amyloliquefaciens strain Fad 77]
ATGGCTAAATCAAAAACAAAATTCATCTGCCACTCATGCGGTTATGAATCCGCAAAATGGATGGGAAAGTGCCCGGGCTG
CGGGGCTTGGAATACAATGGTGGAAGAAACCATAAAAAAAGCGCCGGCGAATCGGCGGGCGGCTTTCTCCCATTCCGTTC
AAACCGTCCAGAAACCATCACCCATTACATCAATTGAAACATCAGAAGAACCCCGCGTTCAAACCAAGCTCGAAGAATTC
AACAGAGTGCTTGGCGGCGGAGTTGTGAAGGGCTCGTTAGTATTAATCGGCGGCGATCCCGGCATCGGTAAATCAACGCT
CCTTCTTCAAGTATCCGCACAATTAGCAGACACGGCCGGCAGCGTGCTTTACATTTCTGGGGAAGAATCTGTGAAGCAAA
CGAAGCTGCGCGCCGACAGACTTGGAATCAACAGCCAATTGTTACATGTTTTATCTGAAACCGATATGGAGTATATTTCG
TCTGCTATACAAGAGATGAAACCCGCATTTGTTGTGGTAGACTCCATTCAGACCGTTTACCAAAGTGATATCACCTCAGC
TCCCGGCAGTGTATCACAAGTAAGAGAGTGTACGGCCGAATTGATGAAAATCGCGAAAACAAACGGCATACCTATTTTTA
TCGTCGGACACGTTACAAAAGAAGGATCGATCGCAGGACCGAGATTGCTTGAGCATATGGTCGATACCGTTCTATACTTT
GAAGGAGAGCGGCACCATACATTCCGTATTTTGCGGGCTGTAAAAAACCGTTTCGGCTCAACAAATGAAATGGGCATCTT
TGAAATGCGGGAAGAAGGGCTTACAGAAGTGCTGAACCCTTCTGAAATTTTCTTAGAAGAGCGTTCTGCCGGGGCTTCGG
GTTCGAGTATCGTTGCGTCAATGGAAGGCACGAGACCGATCTTAGTTGAAATCCAGGCGCTCATATCACCGACCAGCTTC
GGAAATCCGTGCCGCATGGCTACAGGAATTGACCACAACAGGGTGTCGTTAATCATGGCTGTGCTTGAGAAGCGGGTGGG
GCTGTTGCTTCAAAATCAAGATGCGTATTTAAAAGTCGCCGGCGGGGTCAAACTGGATGAACCAGCGATTGATTTGGCAG
TAGCCGTCAGCATTGCTTCAAGCTTCAGAGATACACCGCCAAATCCTGCAGATTGCTTTATCGGTGAAGTGGGTCTGACA
GGAGAAGTCCGCAGGGTGTCAAGAATCGAACAGCGCGTAAAAGAAGCGGCGAAGCTCGGCTTCAAGCGTATGGTCATACC
TGAGGCAAATTCAGACGGATGGACAATACCAAAAGGGATTGAGGTTGTCGGAGTAGCAAATGTTGCAGAAGCGCTTCGTA
CTTCATTAGGAGGATCATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)

AAA domain (AAA_25)

(71-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

93.013

99.782

0.928
  radA Streptococcus pneumoniae Rx1

63.797

98.693

0.63
  radA Streptococcus pneumoniae D39

63.797

98.693

0.63
  radA Streptococcus pneumoniae R6

63.797

98.693

0.63
  radA Streptococcus pneumoniae TIGR4

63.797

98.693

0.63
  radA Streptococcus mitis NCTC 12261

63.797

98.693

0.63
  radA Streptococcus mitis SK321

63.576

98.693

0.627

Multiple sequence alignment