Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   AAVB98_RS07400 Genome accession   NZ_CP154895
Coordinates   1405176..1405574 (+) Length   132 a.a.
NCBI ID   WP_061573682.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 77     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1400176..1410574
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVB98_RS07380 (AAVB98_07380) - 1402584..1402946 (-) 363 WP_013350971.1 helix-turn-helix domain-containing protein -
  AAVB98_RS07385 (AAVB98_07385) hxlA 1403178..1403813 (+) 636 WP_013350970.1 3-hexulose-6-phosphate synthase -
  AAVB98_RS07390 (AAVB98_07390) hxlB 1403810..1404367 (+) 558 WP_013350969.1 6-phospho-3-hexuloisomerase -
  AAVB98_RS07395 (AAVB98_07395) nucA/comI 1404718..1405155 (+) 438 WP_013350968.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AAVB98_RS07400 (AAVB98_07400) nin/comJ 1405176..1405574 (+) 399 WP_061573682.1 competence protein ComJ Regulator
  AAVB98_RS07405 (AAVB98_07405) - 1405615..1407051 (-) 1437 WP_013350966.1 family 1 glycosylhydrolase -
  AAVB98_RS07410 (AAVB98_07410) - 1407156..1407479 (-) 324 WP_013350965.1 YckD family protein -
  AAVB98_RS07415 (AAVB98_07415) - 1407553..1407987 (-) 435 WP_013350964.1 RDD family protein -
  AAVB98_RS07420 (AAVB98_07420) - 1408002..1409133 (-) 1132 Protein_1448 zinc-dependent alcohol dehydrogenase -
  AAVB98_RS07425 (AAVB98_07425) - 1409197..1410399 (-) 1203 WP_013350962.1 GTP-binding protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14941.98 Da        Isoelectric Point: 4.6474

>NTDB_id=994768 AAVB98_RS07400 WP_061573682.1 1405176..1405574(+) (nin/comJ) [Bacillus amyloliquefaciens strain Fad 77]
MIKSWKPQELTISYHQFTIFQKDSEPPVIDWTDKAIEKGYAEADDAVSFEAGRNTKAFIVLRLNTNEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFDLPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=994768 AAVB98_RS07400 WP_061573682.1 1405176..1405574(+) (nin/comJ) [Bacillus amyloliquefaciens strain Fad 77]
TTGATTAAATCATGGAAACCGCAAGAACTGACCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATAAAGCCATTGAAAAAGGATACGCGGAGGCTGACGATGCTGTTTCATTTGAAGCAGGGAGAA
ATACGAAGGCATTTATCGTCCTGAGGCTGAACACAAATGAGCCGGTGCCATCCTATGAGAAAAAAGCGACTGTTCCCTTC
GAGGCTGTAAAAGATGGGATTGAAATTGAAAGCGTGATGTCAAAAAGGCTTTTCTTCGATCTTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCAGATACGTATATTATTGATGCGGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758

Multiple sequence alignment