Detailed information    

insolico Bioinformatically predicted

Overview

Name   comS   Type   Regulator
Locus tag   AAVD18_RS18350 Genome accession   NZ_CP154893
Coordinates   3502456..3502620 (+) Length   54 a.a.
NCBI ID   WP_269387144.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 11/2     
Function   preventing the degradation of ComK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3497456..3507620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD18_RS18345 (AAVD18_18345) srfAB 3499347..3502439 (+) 3093 Protein_3564 surfactin non-ribosomal peptide synthetase SrfAB -
  AAVD18_RS18350 (AAVD18_18350) comS 3502456..3502620 (+) 165 WP_269387144.1 competence protein ComS Regulator

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6236.25 Da        Isoelectric Point: 12.3302

>NTDB_id=994737 AAVD18_RS18350 WP_269387144.1 3502456..3502620(+) (comS) [Bacillus amyloliquefaciens strain Fad 11/2]
MRARRSSSLNRSDKRLIRSIILFPQHNAGCISSISLGRPARATTSLLYFCWRDR

Nucleotide


Download         Length: 165 bp        

>NTDB_id=994737 AAVD18_RS18350 WP_269387144.1 3502456..3502620(+) (comS) [Bacillus amyloliquefaciens strain Fad 11/2]
ATGAGAGCGAGGAGGAGCAGCAGTTTGAACCGATCCGACAAGCGCCTTATCAGAAGCATTATCCTGTTTCCTCAGCACAA
CGCAGGATGTATATCCTCAATCAGCTTGGGCAGGCCAGCACGAGCTACAACGTCCCTGCTGTACTTTTGCTGGAGGGATC
GGTAG

Domains

Predicted by InterproScan.

Bacillus competence protein S (ComS)

(9-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comS Bacillus subtilis subsp. subtilis str. 168

60.87

85.185

0.519

Multiple sequence alignment