Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   AAVD18_RS13710 Genome accession   NZ_CP154893
Coordinates   2601805..2602968 (-) Length   387 a.a.
NCBI ID   WP_061573631.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 11/2     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2596805..2607968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD18_RS13675 (AAVD18_13675) - 2597071..2597490 (-) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  AAVD18_RS13680 (AAVD18_13680) comFC 2597564..2598073 (-) 510 WP_014472303.1 phosphoribosyltransferase family protein Machinery gene
  AAVD18_RS13685 (AAVD18_13685) - 2598083..2598241 (-) 159 Protein_2681 double zinc ribbon domain-containing protein -
  AAVD18_RS13690 (AAVD18_13690) - 2598259..2598543 (-) 285 WP_013353784.1 competence protein ComFB -
  AAVD18_RS13695 (AAVD18_13695) comFA 2598602..2599987 (-) 1386 WP_061573632.1 DEAD/DEAH box helicase Machinery gene
  AAVD18_RS13700 (AAVD18_13700) - 2600094..2600942 (-) 849 WP_013353786.1 DegV family protein -
  AAVD18_RS13705 (AAVD18_13705) degU 2601039..2601728 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AAVD18_RS13710 (AAVD18_13710) degS 2601805..2602968 (-) 1164 WP_061573631.1 two-component sensor histidine kinase DegS Regulator
  AAVD18_RS13715 (AAVD18_13715) - 2603191..2603838 (+) 648 WP_013353788.1 YigZ family protein -
  AAVD18_RS13720 (AAVD18_13720) - 2603843..2605117 (+) 1275 WP_013353789.1 LCP family protein -
  AAVD18_RS13725 (AAVD18_13725) - 2605217..2606293 (-) 1077 WP_013353790.1 MraY family glycosyltransferase -
  AAVD18_RS13730 (AAVD18_13730) - 2606426..2607622 (-) 1197 WP_013353791.1 glycosyltransferase -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45127.99 Da        Isoelectric Point: 7.5132

>NTDB_id=994721 AAVD18_RS13710 WP_061573631.1 2601805..2602968(-) (degS) [Bacillus amyloliquefaciens strain Fad 11/2]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIRDTENKRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKEAKQKKNKSFGLLGMKERVDLLEGTITIDSKLGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=994721 AAVD18_RS13710 WP_061573631.1 2601805..2602968(-) (degS) [Bacillus amyloliquefaciens strain Fad 11/2]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGTAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTCGAAGAACTCAAACAGATCAAACAGCAGG
TGTACGAAGTCATTGAGCTGGGCGACAAACTCGAAGTACATACCCGGCATGCAAGAAACCGCTTGTCGGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAGCAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTAGGGCTTCTGCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATTATCGAAGCCCAGGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCGGCTCAAATGCTGGCAAATGTTATGATGAGATCGGAATTGATAGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGCTTTCAGGAAATCAGAAATCTTCGCCAGAATGTGCGGAATGCTCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGCATCCGAGACACGGAGAACAAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCGCTGAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACTGCTGATTTTGTGGTTCTTATTATTAAGGACAACGGAAAAGGCTTTGATATCAAGGAAGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTCGAAGGAACGATAACGATAGACTCTAAACTAGGTCTTG
GGACATTTATCATGATTAAGGTTCCTTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.065

99.483

0.946

Multiple sequence alignment