Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AAVD18_RS13680 Genome accession   NZ_CP154893
Coordinates   2597564..2598073 (-) Length   169 a.a.
NCBI ID   WP_014472303.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 11/2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2592564..2603073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD18_RS13645 (AAVD18_13645) fliW 2592654..2593085 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  AAVD18_RS13650 (AAVD18_13650) - 2593115..2593684 (-) 570 WP_014471091.1 DUF6470 family protein -
  AAVD18_RS13655 (AAVD18_13655) flgL 2593776..2594693 (-) 918 WP_013353778.1 flagellar hook-associated protein FlgL -
  AAVD18_RS13660 (AAVD18_13660) flgK 2594705..2596222 (-) 1518 WP_013353779.1 flagellar hook-associated protein FlgK -
  AAVD18_RS13665 (AAVD18_13665) - 2596238..2596720 (-) 483 WP_013353780.1 flagellar protein FlgN -
  AAVD18_RS13670 (AAVD18_13670) flgM 2596735..2597001 (-) 267 WP_013353781.1 flagellar biosynthesis anti-sigma factor FlgM -
  AAVD18_RS13675 (AAVD18_13675) - 2597071..2597490 (-) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  AAVD18_RS13680 (AAVD18_13680) comFC 2597564..2598073 (-) 510 WP_014472303.1 phosphoribosyltransferase family protein Machinery gene
  AAVD18_RS13685 (AAVD18_13685) - 2598083..2598241 (-) 159 Protein_2681 double zinc ribbon domain-containing protein -
  AAVD18_RS13690 (AAVD18_13690) - 2598259..2598543 (-) 285 WP_013353784.1 competence protein ComFB -
  AAVD18_RS13695 (AAVD18_13695) comFA 2598602..2599987 (-) 1386 WP_061573632.1 DEAD/DEAH box helicase Machinery gene
  AAVD18_RS13700 (AAVD18_13700) - 2600094..2600942 (-) 849 WP_013353786.1 DegV family protein -
  AAVD18_RS13705 (AAVD18_13705) degU 2601039..2601728 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AAVD18_RS13710 (AAVD18_13710) degS 2601805..2602968 (-) 1164 WP_061573631.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18768.58 Da        Isoelectric Point: 10.4651

>NTDB_id=994718 AAVD18_RS13680 WP_014472303.1 2597564..2598073(-) (comFC) [Bacillus amyloliquefaciens strain Fad 11/2]
MARESKTEQRFLLRQNRSVFLYNDAMKDSLARFKFRGDTKIIQTFERDFTAGFKAAYPANTHILVPIPLSPERLAERGFN
QSELLASLLGMPVISPLIRLNNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAGALLTAGKALS
VSSFTLIRS

Nucleotide


Download         Length: 510 bp        

>NTDB_id=994718 AAVD18_RS13680 WP_014472303.1 2597564..2598073(-) (comFC) [Bacillus amyloliquefaciens strain Fad 11/2]
ATGGCGCGGGAATCAAAAACGGAACAGCGCTTTTTGTTGCGGCAGAACCGTTCGGTTTTTTTGTATAATGATGCAATGAA
GGACTCATTGGCCCGGTTTAAATTCAGGGGTGATACGAAAATCATTCAAACATTTGAACGTGATTTTACTGCCGGCTTTA
AAGCGGCATATCCGGCAAATACACATATCCTCGTCCCTATTCCGCTGAGCCCCGAACGGCTGGCGGAGCGCGGATTTAAT
CAATCCGAGCTGCTGGCCTCGCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTGAACAATGAAAAACAATCCAA
AAAGAGCAAAACAGAAAGGCTCTCCGCAGAAAAAAAGTTTTCAGCTGCCGAAAACTCCGCCGAAGGTATGAACGTCATTT
TAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCTGCCGGAGCTCTGCTGACAGCAGGCAAAGCGTTATCG
GTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(107-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

66.667

94.083

0.627

Multiple sequence alignment